Experiment: Control_ECRC98
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_28965 and JDDGAC_28970 overlap by 4 nucleotides JDDGAC_28970 and JDDGAC_28975 are separated by 462 nucleotides JDDGAC_28975 and JDDGAC_28980 are separated by 41 nucleotides JDDGAC_28980 and JDDGAC_28985 are separated by 291 nucleotides JDDGAC_28985 and JDDGAC_28990 overlap by 4 nucleotides JDDGAC_28990 and ymfN overlap by 4 nucleotides
JDDGAC_28965: JDDGAC_28965 - DNA-binding protein, at 5,531,620 to 5,532,117
_28965
JDDGAC_28970: JDDGAC_28970 - DNA-binding protein, at 5,532,114 to 5,532,371
_28970
JDDGAC_28975: JDDGAC_28975 - DUF3950 domain-containing protein, at 5,532,834 to 5,533,061
_28975
JDDGAC_28980: JDDGAC_28980 - HNH endonuclease, at 5,533,103 to 5,533,468
_28980
JDDGAC_28985: JDDGAC_28985 - Putative terminase subunit encoded by prophage, at 5,533,760 to 5,534,059
_28985
JDDGAC_28990: JDDGAC_28990 - terminase small subunit, at 5,534,056 to 5,534,322
_28990
JDDGAC_28995: ymfN - terminase large subunit, at 5,534,319 to 5,534,951
ymfN
Position (kb) 5533
5534 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5532.270 kb on + strand, within JDDGAC_28970 at 5532.369 kb on + strand at 5532.370 kb on - strand at 5532.389 kb on + strand at 5532.390 kb on - strand at 5532.413 kb on - strand at 5532.413 kb on - strand at 5532.413 kb on - strand at 5532.415 kb on - strand at 5533.400 kb on - strand, within JDDGAC_28980 at 5533.400 kb on - strand, within JDDGAC_28980 at 5534.078 kb on - strand at 5534.078 kb on - strand at 5534.080 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98 remove 5,532,270 + JDDGAC_28970 0.60 +0.2 5,532,369 + -0.6 5,532,370 - -1.0 5,532,389 + -0.9 5,532,390 - +0.5 5,532,413 - +0.6 5,532,413 - +0.1 5,532,413 - -1.5 5,532,415 - -2.4 5,533,400 - JDDGAC_28980 0.81 -2.0 5,533,400 - JDDGAC_28980 0.81 -0.3 5,534,078 - +1.9 5,534,078 - -0.2 5,534,080 - +0.8
Or see this region's nucleotide sequence