Experiment: Control_ECRC98
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeE and yeeD are separated by 13 nucleotides yeeD and sbcB are separated by 42 nucleotides sbcB and JDDGAC_28680 are separated by 463 nucleotides
JDDGAC_28665: yeeE - transport protein YeeE, at 5,501,258 to 5,502,262
yeeE
JDDGAC_28670: yeeD - Putative sulfur carrier protein YeeD, at 5,502,276 to 5,502,503
yeeD
JDDGAC_28675: sbcB - exodeoxyribonuclease I, at 5,502,546 to 5,503,970
sbcB
JDDGAC_28680: JDDGAC_28680 - Integrase, at 5,504,434 to 5,505,330
_28680
Position (kb) 5502
5503
5504 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5501.549 kb on + strand, within yeeE at 5501.550 kb on - strand, within yeeE at 5501.596 kb on - strand, within yeeE at 5501.615 kb on + strand, within yeeE at 5501.615 kb on + strand, within yeeE at 5501.615 kb on + strand, within yeeE at 5501.616 kb on - strand, within yeeE at 5501.629 kb on + strand, within yeeE at 5501.630 kb on - strand, within yeeE at 5501.630 kb on - strand, within yeeE at 5501.630 kb on - strand, within yeeE at 5501.817 kb on + strand, within yeeE at 5501.872 kb on + strand, within yeeE at 5501.872 kb on + strand, within yeeE at 5501.883 kb on + strand, within yeeE at 5501.942 kb on + strand, within yeeE at 5501.942 kb on + strand, within yeeE at 5501.943 kb on - strand, within yeeE at 5501.947 kb on + strand, within yeeE at 5501.992 kb on + strand, within yeeE at 5502.051 kb on + strand, within yeeE at 5502.063 kb on + strand, within yeeE at 5502.094 kb on + strand, within yeeE at 5502.171 kb on + strand at 5502.212 kb on + strand at 5502.212 kb on + strand at 5502.260 kb on + strand at 5502.284 kb on + strand at 5502.376 kb on + strand, within yeeD at 5502.376 kb on + strand, within yeeD at 5502.547 kb on + strand at 5502.583 kb on - strand at 5502.583 kb on - strand at 5502.614 kb on - strand at 5502.872 kb on - strand, within sbcB at 5503.062 kb on - strand, within sbcB at 5503.067 kb on + strand, within sbcB at 5503.123 kb on + strand, within sbcB at 5503.126 kb on - strand, within sbcB at 5503.162 kb on - strand, within sbcB at 5503.194 kb on - strand, within sbcB at 5503.412 kb on - strand, within sbcB at 5503.412 kb on - strand, within sbcB at 5503.443 kb on - strand, within sbcB at 5503.613 kb on - strand, within sbcB at 5503.780 kb on - strand, within sbcB at 5503.780 kb on - strand, within sbcB at 5503.782 kb on + strand, within sbcB at 5504.012 kb on - strand at 5504.044 kb on - strand at 5504.096 kb on + strand at 5504.097 kb on - strand at 5504.097 kb on - strand at 5504.181 kb on + strand at 5504.182 kb on - strand at 5504.182 kb on - strand at 5504.197 kb on + strand at 5504.580 kb on + strand, within JDDGAC_28680 at 5504.668 kb on - strand, within JDDGAC_28680 at 5504.697 kb on + strand, within JDDGAC_28680 at 5504.697 kb on + strand, within JDDGAC_28680 at 5504.698 kb on - strand, within JDDGAC_28680 at 5504.821 kb on - strand, within JDDGAC_28680 at 5504.850 kb on + strand, within JDDGAC_28680 at 5504.850 kb on + strand, within JDDGAC_28680 at 5504.921 kb on + strand, within JDDGAC_28680 at 5504.944 kb on - strand, within JDDGAC_28680
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98 remove 5,501,549 + yeeE JDDGAC_28665 0.29 +0.2 5,501,550 - yeeE JDDGAC_28665 0.29 +0.4 5,501,596 - yeeE JDDGAC_28665 0.34 -2.5 5,501,615 + yeeE JDDGAC_28665 0.36 -0.1 5,501,615 + yeeE JDDGAC_28665 0.36 -0.4 5,501,615 + yeeE JDDGAC_28665 0.36 -0.0 5,501,616 - yeeE JDDGAC_28665 0.36 -0.9 5,501,629 + yeeE JDDGAC_28665 0.37 +1.3 5,501,630 - yeeE JDDGAC_28665 0.37 +3.6 5,501,630 - yeeE JDDGAC_28665 0.37 +0.2 5,501,630 - yeeE JDDGAC_28665 0.37 -2.1 5,501,817 + yeeE JDDGAC_28665 0.56 -1.3 5,501,872 + yeeE JDDGAC_28665 0.61 +0.0 5,501,872 + yeeE JDDGAC_28665 0.61 +0.5 5,501,883 + yeeE JDDGAC_28665 0.62 -0.8 5,501,942 + yeeE JDDGAC_28665 0.68 -0.9 5,501,942 + yeeE JDDGAC_28665 0.68 +0.4 5,501,943 - yeeE JDDGAC_28665 0.68 -0.7 5,501,947 + yeeE JDDGAC_28665 0.69 +1.0 5,501,992 + yeeE JDDGAC_28665 0.73 +0.5 5,502,051 + yeeE JDDGAC_28665 0.79 +0.6 5,502,063 + yeeE JDDGAC_28665 0.80 +0.9 5,502,094 + yeeE JDDGAC_28665 0.83 -3.4 5,502,171 + +0.3 5,502,212 + -1.5 5,502,212 + -2.0 5,502,260 + +1.7 5,502,284 + -1.2 5,502,376 + yeeD JDDGAC_28670 0.44 +0.6 5,502,376 + yeeD JDDGAC_28670 0.44 -0.9 5,502,547 + +0.2 5,502,583 - +0.1 5,502,583 - +0.9 5,502,614 - -0.7 5,502,872 - sbcB JDDGAC_28675 0.23 -1.9 5,503,062 - sbcB JDDGAC_28675 0.36 +0.7 5,503,067 + sbcB JDDGAC_28675 0.37 -0.9 5,503,123 + sbcB JDDGAC_28675 0.40 -1.4 5,503,126 - sbcB JDDGAC_28675 0.41 -1.7 5,503,162 - sbcB JDDGAC_28675 0.43 -0.2 5,503,194 - sbcB JDDGAC_28675 0.45 -0.6 5,503,412 - sbcB JDDGAC_28675 0.61 -0.6 5,503,412 - sbcB JDDGAC_28675 0.61 -0.6 5,503,443 - sbcB JDDGAC_28675 0.63 -0.8 5,503,613 - sbcB JDDGAC_28675 0.75 -1.8 5,503,780 - sbcB JDDGAC_28675 0.87 +1.6 5,503,780 - sbcB JDDGAC_28675 0.87 +1.9 5,503,782 + sbcB JDDGAC_28675 0.87 -1.6 5,504,012 - -1.9 5,504,044 - +0.8 5,504,096 + -0.3 5,504,097 - +1.4 5,504,097 - -0.6 5,504,181 + -0.1 5,504,182 - +0.9 5,504,182 - -0.6 5,504,197 + +0.6 5,504,580 + JDDGAC_28680 0.16 -0.3 5,504,668 - JDDGAC_28680 0.26 +0.7 5,504,697 + JDDGAC_28680 0.29 +0.4 5,504,697 + JDDGAC_28680 0.29 -0.2 5,504,698 - JDDGAC_28680 0.29 -1.6 5,504,821 - JDDGAC_28680 0.43 +0.2 5,504,850 + JDDGAC_28680 0.46 +1.1 5,504,850 + JDDGAC_28680 0.46 +0.7 5,504,921 + JDDGAC_28680 0.54 +2.9 5,504,944 - JDDGAC_28680 0.57 +1.3
Or see this region's nucleotide sequence