Experiment: Control_ECRC98
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimA and fimD are separated by 81 nucleotides fimD and fimC are separated by 22 nucleotides fimC and fimA are separated by 10 nucleotides
JDDGAC_26530: fimA - fimbrial protein, at 5,080,084 to 5,080,647
fimA
JDDGAC_26535: fimD - PapC/FimD family outer membrane usher protein, at 5,080,729 to 5,083,368
fimD
JDDGAC_26540: fimC - fimbrial protein, at 5,083,391 to 5,084,149
fimC
JDDGAC_26545: fimA - fimbrial protein, at 5,084,160 to 5,084,660
fimA
Position (kb) 5080
5081
5082
5083
5084 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5079.954 kb on + strand at 5080.174 kb on - strand, within fimA at 5080.360 kb on - strand, within fimA at 5080.399 kb on + strand, within fimA at 5080.400 kb on - strand, within fimA at 5080.402 kb on + strand, within fimA at 5080.403 kb on - strand, within fimA at 5080.403 kb on - strand, within fimA at 5080.411 kb on + strand, within fimA at 5080.412 kb on - strand, within fimA at 5080.438 kb on - strand, within fimA at 5080.480 kb on + strand, within fimA at 5080.636 kb on - strand at 5080.636 kb on - strand at 5080.639 kb on + strand at 5080.640 kb on - strand at 5080.708 kb on + strand at 5080.708 kb on + strand at 5080.723 kb on - strand at 5080.723 kb on - strand at 5080.723 kb on - strand at 5080.723 kb on - strand at 5080.728 kb on + strand at 5080.729 kb on - strand at 5080.729 kb on - strand at 5080.760 kb on + strand at 5080.900 kb on + strand at 5080.938 kb on - strand at 5080.963 kb on + strand at 5080.964 kb on - strand at 5080.964 kb on - strand at 5080.968 kb on + strand at 5081.008 kb on + strand, within fimD at 5081.009 kb on - strand, within fimD at 5081.049 kb on - strand, within fimD at 5081.188 kb on + strand, within fimD at 5081.191 kb on - strand, within fimD at 5081.232 kb on + strand, within fimD at 5081.254 kb on + strand, within fimD at 5081.255 kb on - strand, within fimD at 5081.255 kb on - strand, within fimD at 5081.255 kb on - strand, within fimD at 5081.259 kb on + strand, within fimD at 5081.259 kb on + strand, within fimD at 5081.314 kb on - strand, within fimD at 5081.380 kb on + strand, within fimD at 5081.381 kb on - strand, within fimD at 5081.389 kb on - strand, within fimD at 5081.391 kb on + strand, within fimD at 5081.458 kb on + strand, within fimD at 5081.484 kb on - strand, within fimD at 5081.545 kb on + strand, within fimD at 5081.546 kb on - strand, within fimD at 5082.253 kb on + strand, within fimD at 5082.265 kb on + strand, within fimD at 5082.265 kb on + strand, within fimD at 5082.265 kb on + strand, within fimD at 5082.265 kb on + strand, within fimD at 5082.266 kb on - strand, within fimD at 5082.301 kb on + strand, within fimD at 5082.310 kb on + strand, within fimD at 5082.311 kb on - strand, within fimD at 5082.321 kb on + strand, within fimD at 5082.321 kb on + strand, within fimD at 5082.322 kb on - strand, within fimD at 5082.352 kb on + strand, within fimD at 5082.353 kb on - strand, within fimD at 5082.353 kb on - strand, within fimD at 5082.353 kb on - strand, within fimD at 5082.373 kb on + strand, within fimD at 5082.374 kb on - strand, within fimD at 5082.434 kb on - strand, within fimD at 5082.460 kb on + strand, within fimD at 5082.460 kb on + strand, within fimD at 5082.461 kb on - strand, within fimD at 5082.461 kb on - strand, within fimD at 5082.461 kb on - strand, within fimD at 5082.464 kb on + strand, within fimD at 5082.464 kb on + strand, within fimD at 5082.474 kb on + strand, within fimD at 5082.505 kb on + strand, within fimD at 5082.505 kb on + strand, within fimD at 5082.517 kb on + strand, within fimD at 5082.551 kb on - strand, within fimD at 5082.551 kb on - strand, within fimD at 5082.594 kb on - strand, within fimD at 5082.629 kb on - strand, within fimD at 5082.676 kb on + strand, within fimD at 5082.691 kb on + strand, within fimD at 5082.852 kb on + strand, within fimD at 5082.853 kb on - strand, within fimD at 5082.907 kb on + strand, within fimD at 5082.907 kb on + strand, within fimD at 5082.908 kb on - strand, within fimD at 5082.908 kb on - strand, within fimD at 5082.908 kb on - strand, within fimD at 5082.917 kb on + strand, within fimD at 5082.918 kb on - strand, within fimD at 5083.132 kb on + strand at 5083.161 kb on + strand at 5083.162 kb on - strand at 5083.244 kb on + strand at 5083.245 kb on - strand at 5083.245 kb on - strand at 5083.247 kb on + strand at 5083.247 kb on + strand at 5083.247 kb on + strand at 5083.247 kb on + strand at 5083.369 kb on + strand at 5083.378 kb on + strand at 5083.402 kb on - strand at 5083.677 kb on + strand, within fimC at 5083.677 kb on + strand, within fimC at 5083.771 kb on + strand, within fimC at 5083.771 kb on + strand, within fimC at 5083.875 kb on + strand, within fimC at 5083.876 kb on - strand, within fimC at 5084.051 kb on + strand, within fimC at 5084.051 kb on + strand, within fimC at 5084.052 kb on - strand, within fimC at 5084.052 kb on - strand, within fimC at 5084.052 kb on - strand, within fimC at 5084.052 kb on - strand, within fimC at 5084.063 kb on + strand, within fimC at 5084.064 kb on - strand, within fimC at 5084.104 kb on + strand at 5084.105 kb on - strand at 5084.156 kb on + strand at 5084.157 kb on - strand at 5084.192 kb on - strand at 5084.201 kb on + strand at 5084.222 kb on - strand, within fimA at 5084.285 kb on + strand, within fimA at 5084.286 kb on - strand, within fimA at 5084.344 kb on + strand, within fimA at 5084.344 kb on + strand, within fimA at 5084.350 kb on - strand, within fimA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98 remove 5,079,954 + +0.4 5,080,174 - fimA JDDGAC_26530 0.16 -0.3 5,080,360 - fimA JDDGAC_26530 0.49 -1.2 5,080,399 + fimA JDDGAC_26530 0.56 +0.3 5,080,400 - fimA JDDGAC_26530 0.56 -0.9 5,080,402 + fimA JDDGAC_26530 0.56 -1.2 5,080,403 - fimA JDDGAC_26530 0.57 -2.5 5,080,403 - fimA JDDGAC_26530 0.57 +0.1 5,080,411 + fimA JDDGAC_26530 0.58 -2.4 5,080,412 - fimA JDDGAC_26530 0.58 +0.9 5,080,438 - fimA JDDGAC_26530 0.63 -0.0 5,080,480 + fimA JDDGAC_26530 0.70 -0.1 5,080,636 - +2.3 5,080,636 - -0.5 5,080,639 + +0.0 5,080,640 - +0.1 5,080,708 + +0.3 5,080,708 + -0.3 5,080,723 - -0.5 5,080,723 - +1.0 5,080,723 - -1.6 5,080,723 - -0.8 5,080,728 + -0.6 5,080,729 - +0.4 5,080,729 - -1.9 5,080,760 + +0.0 5,080,900 + -0.3 5,080,938 - -0.0 5,080,963 + -0.4 5,080,964 - +0.1 5,080,964 - +0.1 5,080,968 + +0.0 5,081,008 + fimD JDDGAC_26535 0.11 +0.2 5,081,009 - fimD JDDGAC_26535 0.11 +0.9 5,081,049 - fimD JDDGAC_26535 0.12 -1.1 5,081,188 + fimD JDDGAC_26535 0.17 -0.0 5,081,191 - fimD JDDGAC_26535 0.17 -0.5 5,081,232 + fimD JDDGAC_26535 0.19 +1.0 5,081,254 + fimD JDDGAC_26535 0.20 +0.4 5,081,255 - fimD JDDGAC_26535 0.20 -0.9 5,081,255 - fimD JDDGAC_26535 0.20 +0.0 5,081,255 - fimD JDDGAC_26535 0.20 +0.4 5,081,259 + fimD JDDGAC_26535 0.20 +1.3 5,081,259 + fimD JDDGAC_26535 0.20 +1.5 5,081,314 - fimD JDDGAC_26535 0.22 +0.2 5,081,380 + fimD JDDGAC_26535 0.25 -0.9 5,081,381 - fimD JDDGAC_26535 0.25 +0.3 5,081,389 - fimD JDDGAC_26535 0.25 +0.9 5,081,391 + fimD JDDGAC_26535 0.25 -2.0 5,081,458 + fimD JDDGAC_26535 0.28 -0.6 5,081,484 - fimD JDDGAC_26535 0.29 -1.4 5,081,545 + fimD JDDGAC_26535 0.31 +0.6 5,081,546 - fimD JDDGAC_26535 0.31 -1.9 5,082,253 + fimD JDDGAC_26535 0.58 -1.2 5,082,265 + fimD JDDGAC_26535 0.58 +0.1 5,082,265 + fimD JDDGAC_26535 0.58 +0.3 5,082,265 + fimD JDDGAC_26535 0.58 +0.3 5,082,265 + fimD JDDGAC_26535 0.58 +2.1 5,082,266 - fimD JDDGAC_26535 0.58 -0.4 5,082,301 + fimD JDDGAC_26535 0.60 -1.4 5,082,310 + fimD JDDGAC_26535 0.60 -0.1 5,082,311 - fimD JDDGAC_26535 0.60 -0.4 5,082,321 + fimD JDDGAC_26535 0.60 +0.6 5,082,321 + fimD JDDGAC_26535 0.60 -0.4 5,082,322 - fimD JDDGAC_26535 0.60 -0.2 5,082,352 + fimD JDDGAC_26535 0.61 -0.5 5,082,353 - fimD JDDGAC_26535 0.62 +0.5 5,082,353 - fimD JDDGAC_26535 0.62 +0.6 5,082,353 - fimD JDDGAC_26535 0.62 -1.0 5,082,373 + fimD JDDGAC_26535 0.62 -0.5 5,082,374 - fimD JDDGAC_26535 0.62 +0.5 5,082,434 - fimD JDDGAC_26535 0.65 -0.7 5,082,460 + fimD JDDGAC_26535 0.66 +0.7 5,082,460 + fimD JDDGAC_26535 0.66 -2.9 5,082,461 - fimD JDDGAC_26535 0.66 -0.3 5,082,461 - fimD JDDGAC_26535 0.66 -0.2 5,082,461 - fimD JDDGAC_26535 0.66 +1.9 5,082,464 + fimD JDDGAC_26535 0.66 +0.3 5,082,464 + fimD JDDGAC_26535 0.66 +0.3 5,082,474 + fimD JDDGAC_26535 0.66 +0.3 5,082,505 + fimD JDDGAC_26535 0.67 +0.7 5,082,505 + fimD JDDGAC_26535 0.67 -0.4 5,082,517 + fimD JDDGAC_26535 0.68 -1.2 5,082,551 - fimD JDDGAC_26535 0.69 +1.3 5,082,551 - fimD JDDGAC_26535 0.69 +0.0 5,082,594 - fimD JDDGAC_26535 0.71 +0.5 5,082,629 - fimD JDDGAC_26535 0.72 -0.7 5,082,676 + fimD JDDGAC_26535 0.74 -1.0 5,082,691 + fimD JDDGAC_26535 0.74 +1.2 5,082,852 + fimD JDDGAC_26535 0.80 -1.3 5,082,853 - fimD JDDGAC_26535 0.80 -3.5 5,082,907 + fimD JDDGAC_26535 0.82 +1.3 5,082,907 + fimD JDDGAC_26535 0.82 +1.7 5,082,908 - fimD JDDGAC_26535 0.83 +0.5 5,082,908 - fimD JDDGAC_26535 0.83 -0.3 5,082,908 - fimD JDDGAC_26535 0.83 -2.1 5,082,917 + fimD JDDGAC_26535 0.83 -0.7 5,082,918 - fimD JDDGAC_26535 0.83 +1.1 5,083,132 + -0.1 5,083,161 + +0.5 5,083,162 - -1.9 5,083,244 + -0.3 5,083,245 - -0.2 5,083,245 - -1.2 5,083,247 + +0.8 5,083,247 + -0.9 5,083,247 + -0.4 5,083,247 + -0.1 5,083,369 + -0.6 5,083,378 + -2.2 5,083,402 - +1.3 5,083,677 + fimC JDDGAC_26540 0.38 -2.1 5,083,677 + fimC JDDGAC_26540 0.38 +0.0 5,083,771 + fimC JDDGAC_26540 0.50 +0.1 5,083,771 + fimC JDDGAC_26540 0.50 -1.0 5,083,875 + fimC JDDGAC_26540 0.64 +2.9 5,083,876 - fimC JDDGAC_26540 0.64 -1.5 5,084,051 + fimC JDDGAC_26540 0.87 +2.5 5,084,051 + fimC JDDGAC_26540 0.87 -0.4 5,084,052 - fimC JDDGAC_26540 0.87 +0.4 5,084,052 - fimC JDDGAC_26540 0.87 -1.8 5,084,052 - fimC JDDGAC_26540 0.87 +1.8 5,084,052 - fimC JDDGAC_26540 0.87 -0.5 5,084,063 + fimC JDDGAC_26540 0.89 -0.7 5,084,064 - fimC JDDGAC_26540 0.89 -1.7 5,084,104 + +0.5 5,084,105 - +1.5 5,084,156 + +1.6 5,084,157 - -0.4 5,084,192 - +0.1 5,084,201 + -1.3 5,084,222 - fimA JDDGAC_26545 0.12 -0.3 5,084,285 + fimA JDDGAC_26545 0.25 +0.7 5,084,286 - fimA JDDGAC_26545 0.25 -0.7 5,084,344 + fimA JDDGAC_26545 0.37 -0.9 5,084,344 + fimA JDDGAC_26545 0.37 -1.4 5,084,350 - fimA JDDGAC_26545 0.38 +1.1
Or see this region's nucleotide sequence