Strain Fitness in Escherichia coli ECRC98 around JDDGAC_26010

Experiment: Control_ECRC98

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteutH and eutA overlap by 4 nucleotideseutA and eutA are separated by 6 nucleotideseutA and eutB are separated by 11 nucleotides JDDGAC_26005: eutH - ethanolamine utilization protein EutH, at 4,975,427 to 4,976,653 eutH JDDGAC_26010: eutA - ethanolamine ammonia-lyase reactivating factor EutA, at 4,976,650 to 4,977,207 eutA JDDGAC_26015: eutA - ethanolamine ammonia-lyase reactivating factor EutA, at 4,977,214 to 4,978,053 eutA JDDGAC_26020: eutB - ethanolamine ammonia-lyase subunit alpha, at 4,978,065 to 4,979,426 eutB Position (kb) 4976 4977 4978Strain fitness (log2 ratio) -2 -1 0 1 2at 4975.650 kb on + strand, within eutHat 4975.883 kb on + strand, within eutHat 4975.933 kb on + strand, within eutHat 4975.954 kb on + strand, within eutHat 4975.954 kb on + strand, within eutHat 4975.954 kb on + strand, within eutHat 4975.954 kb on + strand, within eutHat 4975.954 kb on + strand, within eutHat 4975.954 kb on + strand, within eutHat 4975.955 kb on - strand, within eutHat 4975.955 kb on - strand, within eutHat 4975.958 kb on + strand, within eutHat 4975.958 kb on + strand, within eutHat 4975.958 kb on + strand, within eutHat 4975.958 kb on + strand, within eutHat 4976.200 kb on + strand, within eutHat 4976.200 kb on + strand, within eutHat 4976.502 kb on + strand, within eutHat 4976.502 kb on + strand, within eutHat 4976.502 kb on + strand, within eutHat 4976.502 kb on + strand, within eutHat 4976.503 kb on - strand, within eutHat 4976.811 kb on + strand, within eutAat 4976.837 kb on + strand, within eutAat 4976.867 kb on + strand, within eutAat 4977.127 kb on + strand, within eutAat 4977.127 kb on + strand, within eutAat 4977.128 kb on - strand, within eutAat 4977.206 kb on - strandat 4977.381 kb on - strand, within eutAat 4977.427 kb on - strand, within eutAat 4977.603 kb on + strand, within eutAat 4977.604 kb on - strand, within eutAat 4977.604 kb on - strand, within eutAat 4977.644 kb on + strand, within eutAat 4977.644 kb on + strand, within eutAat 4977.644 kb on + strand, within eutAat 4977.645 kb on - strand, within eutAat 4977.645 kb on - strand, within eutAat 4977.757 kb on + strand, within eutAat 4977.757 kb on + strand, within eutAat 4977.757 kb on + strand, within eutAat 4977.757 kb on + strand, within eutAat 4977.758 kb on - strand, within eutAat 4977.891 kb on + strand, within eutAat 4977.923 kb on + strand, within eutAat 4977.924 kb on - strand, within eutAat 4977.977 kb on - strandat 4977.979 kb on - strandat 4977.990 kb on + strandat 4977.990 kb on + strandat 4978.064 kb on + strandat 4978.064 kb on + strandat 4978.065 kb on - strandat 4978.072 kb on + strandat 4978.097 kb on - strandat 4978.097 kb on - strandat 4978.097 kb on - strandat 4978.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98
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4,975,650 + eutH JDDGAC_26005 0.18 +1.0
4,975,883 + eutH JDDGAC_26005 0.37 -0.9
4,975,933 + eutH JDDGAC_26005 0.41 -0.9
4,975,954 + eutH JDDGAC_26005 0.43 -0.3
4,975,954 + eutH JDDGAC_26005 0.43 -0.5
4,975,954 + eutH JDDGAC_26005 0.43 +0.1
4,975,954 + eutH JDDGAC_26005 0.43 -0.3
4,975,954 + eutH JDDGAC_26005 0.43 -0.4
4,975,954 + eutH JDDGAC_26005 0.43 -0.1
4,975,955 - eutH JDDGAC_26005 0.43 +1.2
4,975,955 - eutH JDDGAC_26005 0.43 -1.2
4,975,958 + eutH JDDGAC_26005 0.43 +0.8
4,975,958 + eutH JDDGAC_26005 0.43 +1.2
4,975,958 + eutH JDDGAC_26005 0.43 +0.6
4,975,958 + eutH JDDGAC_26005 0.43 -2.4
4,976,200 + eutH JDDGAC_26005 0.63 -1.3
4,976,200 + eutH JDDGAC_26005 0.63 +2.1
4,976,502 + eutH JDDGAC_26005 0.88 -0.7
4,976,502 + eutH JDDGAC_26005 0.88 +1.1
4,976,502 + eutH JDDGAC_26005 0.88 +0.2
4,976,502 + eutH JDDGAC_26005 0.88 -1.0
4,976,503 - eutH JDDGAC_26005 0.88 -0.9
4,976,811 + eutA JDDGAC_26010 0.29 -0.8
4,976,837 + eutA JDDGAC_26010 0.34 -1.5
4,976,867 + eutA JDDGAC_26010 0.39 -2.5
4,977,127 + eutA JDDGAC_26010 0.85 +0.2
4,977,127 + eutA JDDGAC_26010 0.85 -1.6
4,977,128 - eutA JDDGAC_26010 0.86 -0.3
4,977,206 - -0.5
4,977,381 - eutA JDDGAC_26015 0.20 +0.0
4,977,427 - eutA JDDGAC_26015 0.25 +1.8
4,977,603 + eutA JDDGAC_26015 0.46 -0.3
4,977,604 - eutA JDDGAC_26015 0.46 -0.2
4,977,604 - eutA JDDGAC_26015 0.46 -0.3
4,977,644 + eutA JDDGAC_26015 0.51 -0.5
4,977,644 + eutA JDDGAC_26015 0.51 -0.6
4,977,644 + eutA JDDGAC_26015 0.51 -0.5
4,977,645 - eutA JDDGAC_26015 0.51 -1.0
4,977,645 - eutA JDDGAC_26015 0.51 +0.1
4,977,757 + eutA JDDGAC_26015 0.65 +0.4
4,977,757 + eutA JDDGAC_26015 0.65 +0.4
4,977,757 + eutA JDDGAC_26015 0.65 -0.1
4,977,757 + eutA JDDGAC_26015 0.65 +0.0
4,977,758 - eutA JDDGAC_26015 0.65 -1.2
4,977,891 + eutA JDDGAC_26015 0.81 +0.5
4,977,923 + eutA JDDGAC_26015 0.84 +0.4
4,977,924 - eutA JDDGAC_26015 0.85 +1.8
4,977,977 - -2.0
4,977,979 - +0.2
4,977,990 + -1.2
4,977,990 + -0.2
4,978,064 + +0.5
4,978,064 + +1.2
4,978,065 - -1.6
4,978,072 + -0.5
4,978,097 - +0.5
4,978,097 - +0.5
4,978,097 - -2.0
4,978,107 - +2.0

Or see this region's nucleotide sequence