Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07970

Experiment: Control_ECRC98

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and JDDGAC_07970 are separated by 446 nucleotidesJDDGAC_07970 and JDDGAC_07975 are separated by 161 nucleotides JDDGAC_07965: tnp-IS3 - IS3 family transposase, at 1,373,815 to 1,374,702 tnp-IS3 JDDGAC_07970: JDDGAC_07970 - hypothetical protein, at 1,375,149 to 1,375,418 _07970 JDDGAC_07975: JDDGAC_07975 - DEAD/DEAH box helicase, at 1,375,580 to 1,377,940 _07975 Position (kb) 1375 1376Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1374.838 kb on + strandat 1374.852 kb on + strandat 1374.884 kb on - strandat 1375.138 kb on - strandat 1375.273 kb on - strand, within JDDGAC_07970at 1375.355 kb on - strand, within JDDGAC_07970at 1375.377 kb on + strand, within JDDGAC_07970at 1375.417 kb on - strandat 1375.569 kb on - strandat 1375.569 kb on - strandat 1375.608 kb on - strandat 1375.630 kb on + strandat 1375.631 kb on - strandat 1375.754 kb on + strandat 1375.754 kb on + strandat 1375.755 kb on - strandat 1375.828 kb on + strand, within JDDGAC_07975at 1375.829 kb on - strand, within JDDGAC_07975at 1375.933 kb on + strand, within JDDGAC_07975at 1376.051 kb on + strand, within JDDGAC_07975at 1376.052 kb on - strand, within JDDGAC_07975at 1376.121 kb on - strand, within JDDGAC_07975at 1376.214 kb on + strand, within JDDGAC_07975at 1376.326 kb on + strand, within JDDGAC_07975at 1376.417 kb on - strand, within JDDGAC_07975

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98
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1,374,838 + -0.8
1,374,852 + +1.1
1,374,884 - -0.6
1,375,138 - +2.7
1,375,273 - JDDGAC_07970 0.46 -1.8
1,375,355 - JDDGAC_07970 0.76 -0.5
1,375,377 + JDDGAC_07970 0.84 -2.0
1,375,417 - -0.1
1,375,569 - +0.3
1,375,569 - +1.6
1,375,608 - -0.8
1,375,630 + -1.6
1,375,631 - +1.3
1,375,754 + -0.1
1,375,754 + -0.8
1,375,755 - -0.0
1,375,828 + JDDGAC_07975 0.11 -0.7
1,375,829 - JDDGAC_07975 0.11 +0.3
1,375,933 + JDDGAC_07975 0.15 +1.3
1,376,051 + JDDGAC_07975 0.20 +0.0
1,376,052 - JDDGAC_07975 0.20 -2.8
1,376,121 - JDDGAC_07975 0.23 +1.5
1,376,214 + JDDGAC_07975 0.27 -1.2
1,376,326 + JDDGAC_07975 0.32 +1.1
1,376,417 - JDDGAC_07975 0.35 -0.6

Or see this region's nucleotide sequence