Experiment: Control_ECRC98
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dicB and JDDGAC_05865 overlap by 4 nucleotides JDDGAC_05865 and JDDGAC_05870 are separated by 92 nucleotides JDDGAC_05870 and JDDGAC_05875 are separated by 290 nucleotides
JDDGAC_05860: dicB - Division inhibition protein DicB, at 1,015,638 to 1,015,826
dicB
JDDGAC_05865: JDDGAC_05865 - DUF1482 domain-containing protein, at 1,015,823 to 1,016,014
_05865
JDDGAC_05870: JDDGAC_05870 - exonuclease, at 1,016,107 to 1,018,578
_05870
JDDGAC_05875: JDDGAC_05875 - integrase, at 1,018,869 to 1,019,999
_05875
Position (kb) 1016
1017
1018
1019 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1016.341 kb on + strand at 1016.343 kb on + strand at 1016.946 kb on + strand, within JDDGAC_05870 at 1017.826 kb on + strand, within JDDGAC_05870 at 1018.089 kb on - strand, within JDDGAC_05870 at 1018.089 kb on - strand, within JDDGAC_05870 at 1018.192 kb on - strand, within JDDGAC_05870 at 1018.608 kb on - strand at 1018.608 kb on - strand at 1018.608 kb on - strand at 1018.712 kb on - strand at 1018.720 kb on + strand at 1018.890 kb on - strand at 1019.018 kb on + strand, within JDDGAC_05875 at 1019.018 kb on + strand, within JDDGAC_05875 at 1019.090 kb on + strand, within JDDGAC_05875 at 1019.278 kb on + strand, within JDDGAC_05875 at 1019.295 kb on + strand, within JDDGAC_05875 at 1019.295 kb on + strand, within JDDGAC_05875 at 1019.295 kb on + strand, within JDDGAC_05875 at 1019.341 kb on + strand, within JDDGAC_05875 at 1019.500 kb on - strand, within JDDGAC_05875
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98 remove 1,016,341 + +2.9 1,016,343 + -1.9 1,016,946 + JDDGAC_05870 0.34 +1.3 1,017,826 + JDDGAC_05870 0.70 -1.8 1,018,089 - JDDGAC_05870 0.80 -0.8 1,018,089 - JDDGAC_05870 0.80 -0.3 1,018,192 - JDDGAC_05870 0.84 -1.2 1,018,608 - +1.4 1,018,608 - -0.9 1,018,608 - -1.0 1,018,712 - +0.5 1,018,720 + +0.9 1,018,890 - +2.6 1,019,018 + JDDGAC_05875 0.13 +0.9 1,019,018 + JDDGAC_05875 0.13 +0.3 1,019,090 + JDDGAC_05875 0.20 -0.0 1,019,278 + JDDGAC_05875 0.36 +0.3 1,019,295 + JDDGAC_05875 0.38 +0.2 1,019,295 + JDDGAC_05875 0.38 -1.0 1,019,295 + JDDGAC_05875 0.38 +2.7 1,019,341 + JDDGAC_05875 0.42 -0.2 1,019,500 - JDDGAC_05875 0.56 -0.2
Or see this region's nucleotide sequence