Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03685

Experiment: Control_ECRC98

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlsrR and lsrK are separated by 78 nucleotideslsrK and JDDGAC_03690 are separated by 530 nucleotides JDDGAC_03680: lsrR - transcriptional regulator LsrR, at 614,032 to 614,985 lsrR JDDGAC_03685: lsrK - autoinducer-2 kinase, at 615,064 to 616,656 lsrK JDDGAC_03690: JDDGAC_03690 - ECSE_1600 family autotransporter, at 617,187 to 621,218 _03690 Position (kb) 615 616 617Strain fitness (log2 ratio) -1 0 1 2 3at 614.107 kb on + strandat 614.223 kb on + strand, within lsrRat 614.355 kb on + strand, within lsrRat 614.421 kb on + strand, within lsrRat 614.499 kb on + strand, within lsrRat 614.730 kb on - strand, within lsrRat 614.931 kb on + strandat 615.225 kb on + strand, within lsrKat 615.515 kb on + strand, within lsrKat 615.592 kb on + strand, within lsrKat 615.594 kb on + strand, within lsrKat 615.755 kb on + strand, within lsrKat 616.314 kb on + strand, within lsrKat 616.556 kb on - strandat 616.785 kb on - strandat 617.502 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98
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614,107 + -1.5
614,223 + lsrR JDDGAC_03680 0.20 -1.3
614,355 + lsrR JDDGAC_03680 0.34 +2.1
614,421 + lsrR JDDGAC_03680 0.41 +2.9
614,499 + lsrR JDDGAC_03680 0.49 +0.7
614,730 - lsrR JDDGAC_03680 0.73 +0.7
614,931 + -0.2
615,225 + lsrK JDDGAC_03685 0.10 -0.1
615,515 + lsrK JDDGAC_03685 0.28 -0.8
615,592 + lsrK JDDGAC_03685 0.33 -1.5
615,594 + lsrK JDDGAC_03685 0.33 +0.3
615,755 + lsrK JDDGAC_03685 0.43 -1.0
616,314 + lsrK JDDGAC_03685 0.78 -0.8
616,556 - +0.3
616,785 - +3.4
617,502 - -1.0

Or see this region's nucleotide sequence