Experiment: Control_ECRC98
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydgI and ydgH are separated by 185 nucleotides ydgH and pntA are separated by 523 nucleotides
JDDGAC_02270: ydgI - Putative arginine/ornithine antiporter, at 409,813 to 411,195
ydgI
JDDGAC_02275: ydgH - DUF1471 domain-containing protein, at 411,381 to 412,325
ydgH
JDDGAC_02280: pntA - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 412,849 to 414,381
pntA
Position (kb) 411
412
413 Strain fitness (log2 ratio) -2
-1
0
1
2 at 410.463 kb on - strand, within ydgI at 410.731 kb on - strand, within ydgI at 410.817 kb on + strand, within ydgI at 410.821 kb on - strand, within ydgI at 410.821 kb on - strand, within ydgI at 411.211 kb on - strand at 411.233 kb on + strand at 411.364 kb on + strand at 411.365 kb on - strand at 411.365 kb on - strand at 411.379 kb on - strand at 411.382 kb on + strand at 411.389 kb on - strand at 411.414 kb on - strand at 411.414 kb on - strand at 411.416 kb on + strand at 411.416 kb on + strand at 411.416 kb on + strand at 411.417 kb on - strand at 411.451 kb on + strand at 411.452 kb on - strand at 411.452 kb on - strand at 411.456 kb on - strand at 411.456 kb on - strand at 411.878 kb on - strand, within ydgH at 411.933 kb on - strand, within ydgH at 412.120 kb on + strand, within ydgH at 412.120 kb on + strand, within ydgH at 412.121 kb on - strand, within ydgH at 412.143 kb on - strand, within ydgH at 412.188 kb on - strand, within ydgH at 412.363 kb on + strand at 412.369 kb on + strand at 412.370 kb on - strand at 412.370 kb on - strand at 412.433 kb on - strand at 412.477 kb on + strand at 412.508 kb on + strand at 412.509 kb on - strand at 412.509 kb on - strand at 412.512 kb on - strand at 412.548 kb on + strand at 412.604 kb on + strand at 412.604 kb on + strand at 412.605 kb on - strand at 412.605 kb on - strand at 412.627 kb on - strand at 412.702 kb on + strand at 412.779 kb on + strand at 412.779 kb on + strand at 412.780 kb on - strand at 412.845 kb on + strand at 412.862 kb on + strand at 412.942 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98 remove 410,463 - ydgI JDDGAC_02270 0.47 +0.5 410,731 - ydgI JDDGAC_02270 0.66 +0.6 410,817 + ydgI JDDGAC_02270 0.73 -0.3 410,821 - ydgI JDDGAC_02270 0.73 -0.1 410,821 - ydgI JDDGAC_02270 0.73 +0.3 411,211 - -0.7 411,233 + +0.9 411,364 + -0.1 411,365 - +0.3 411,365 - -1.1 411,379 - -1.3 411,382 + -1.1 411,389 - -0.3 411,414 - +0.0 411,414 - -0.5 411,416 + -0.7 411,416 + -1.1 411,416 + +1.3 411,417 - -1.5 411,451 + -0.4 411,452 - -0.5 411,452 - +0.6 411,456 - +0.3 411,456 - -1.5 411,878 - ydgH JDDGAC_02275 0.53 -2.1 411,933 - ydgH JDDGAC_02275 0.58 +0.3 412,120 + ydgH JDDGAC_02275 0.78 +0.5 412,120 + ydgH JDDGAC_02275 0.78 -1.8 412,121 - ydgH JDDGAC_02275 0.78 -0.5 412,143 - ydgH JDDGAC_02275 0.81 -2.0 412,188 - ydgH JDDGAC_02275 0.85 -0.1 412,363 + +0.9 412,369 + -0.6 412,370 - -0.3 412,370 - +0.2 412,433 - -0.9 412,477 + -0.1 412,508 + -0.5 412,509 - +0.2 412,509 - -0.1 412,512 - -0.1 412,548 + -0.1 412,604 + -1.6 412,604 + +1.3 412,605 - -1.4 412,605 - -0.9 412,627 - +1.9 412,702 + +0.9 412,779 + -1.1 412,779 + -0.7 412,780 - -1.9 412,845 + +0.3 412,862 + +1.5 412,942 - +0.7
Or see this region's nucleotide sequence