Experiment: Control_ECRC98
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_02110 and nth are separated by 127 nucleotides nth and rsxE overlap by 1 nucleotides rsxE and rsxG are separated by 3 nucleotides rsxG and rsxD are separated by 3 nucleotides
JDDGAC_02110: JDDGAC_02110 - hypothetical protein, at 378,340 to 378,540
_02110
JDDGAC_02115: nth - endonuclease III, at 378,668 to 379,303
nth
JDDGAC_02120: rsxE - electron transport complex subunit RsxE, at 379,303 to 379,998
rsxE
JDDGAC_02125: rsxG - electron transport complex subunit RsxG, at 380,002 to 380,622
rsxG
JDDGAC_02130: rsxD - electron transport complex subunit RsxD, at 380,626 to 381,684
rsxD
Position (kb) 379
380 Strain fitness (log2 ratio) -2
-1
0
1 at 378.713 kb on - strand at 378.713 kb on - strand at 378.749 kb on - strand, within nth at 378.902 kb on - strand, within nth at 378.927 kb on - strand, within nth at 379.003 kb on + strand, within nth at 379.004 kb on - strand, within nth at 379.004 kb on - strand, within nth at 379.163 kb on - strand, within nth at 379.197 kb on - strand, within nth at 379.483 kb on + strand, within rsxE at 379.484 kb on - strand, within rsxE at 379.505 kb on - strand, within rsxE at 379.672 kb on - strand, within rsxE at 379.672 kb on - strand, within rsxE at 379.785 kb on - strand, within rsxE at 379.856 kb on - strand, within rsxE at 379.864 kb on - strand, within rsxE at 379.864 kb on - strand, within rsxE at 379.977 kb on + strand at 380.004 kb on - strand at 380.055 kb on - strand at 380.411 kb on - strand, within rsxG at 380.593 kb on - strand at 380.593 kb on - strand at 380.664 kb on - strand at 380.666 kb on + strand at 380.756 kb on - strand, within rsxD at 380.756 kb on - strand, within rsxD at 380.803 kb on - strand, within rsxD at 380.939 kb on - strand, within rsxD at 380.939 kb on - strand, within rsxD at 380.989 kb on + strand, within rsxD
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98 remove 378,713 - +0.8 378,713 - +0.9 378,749 - nth JDDGAC_02115 0.13 +0.4 378,902 - nth JDDGAC_02115 0.37 -1.1 378,927 - nth JDDGAC_02115 0.41 -2.1 379,003 + nth JDDGAC_02115 0.53 -0.4 379,004 - nth JDDGAC_02115 0.53 +0.8 379,004 - nth JDDGAC_02115 0.53 -0.4 379,163 - nth JDDGAC_02115 0.78 -0.7 379,197 - nth JDDGAC_02115 0.83 +1.4 379,483 + rsxE JDDGAC_02120 0.26 -0.8 379,484 - rsxE JDDGAC_02120 0.26 -0.5 379,505 - rsxE JDDGAC_02120 0.29 -1.0 379,672 - rsxE JDDGAC_02120 0.53 -2.0 379,672 - rsxE JDDGAC_02120 0.53 -1.8 379,785 - rsxE JDDGAC_02120 0.69 +0.5 379,856 - rsxE JDDGAC_02120 0.79 -1.3 379,864 - rsxE JDDGAC_02120 0.81 +0.9 379,864 - rsxE JDDGAC_02120 0.81 -0.2 379,977 + -1.0 380,004 - +0.6 380,055 - -0.2 380,411 - rsxG JDDGAC_02125 0.66 -1.7 380,593 - -1.4 380,593 - +0.1 380,664 - +0.3 380,666 + -0.8 380,756 - rsxD JDDGAC_02130 0.12 +0.3 380,756 - rsxD JDDGAC_02130 0.12 -1.1 380,803 - rsxD JDDGAC_02130 0.17 -1.1 380,939 - rsxD JDDGAC_02130 0.30 -0.1 380,939 - rsxD JDDGAC_02130 0.30 -0.1 380,989 + rsxD JDDGAC_02130 0.34 -2.5
Or see this region's nucleotide sequence