Experiment: Control_ECRC98
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nemR and ydhL are separated by 102 nucleotides ydhL and ydhF are separated by 48 nucleotides ydhF and sodC are separated by 188 nucleotides sodC and ydhK are separated by 0 nucleotides
JDDGAC_02030: nemR - DNA-binding transcriptional regulator NemR, at 364,205 to 364,804
nemR
JDDGAC_02035: ydhL - Uncharacterized protein YdhL, at 364,907 to 365,146
ydhL
JDDGAC_02040: ydhF - Oxidoreductase YdhF, at 365,195 to 365,983
ydhF
JDDGAC_02045: sodC - superoxide dismutase [Cu-Zn] SodC, at 366,172 to 366,693
sodC
JDDGAC_02050: ydhK - Uncharacterized transporter YdhK, at 366,694 to 368,706
ydhK
Position (kb) 365
366 Strain fitness (log2 ratio) -2
-1
0
1
2 at 364.236 kb on - strand at 364.236 kb on - strand at 364.308 kb on - strand, within nemR at 364.356 kb on - strand, within nemR at 364.479 kb on - strand, within nemR at 364.540 kb on - strand, within nemR at 364.540 kb on - strand, within nemR at 364.540 kb on - strand, within nemR at 364.565 kb on - strand, within nemR at 364.565 kb on - strand, within nemR at 364.605 kb on + strand, within nemR at 364.606 kb on - strand, within nemR at 364.606 kb on - strand, within nemR at 364.606 kb on - strand, within nemR at 364.669 kb on - strand, within nemR at 364.781 kb on - strand at 364.852 kb on - strand at 364.875 kb on + strand at 365.173 kb on + strand at 365.194 kb on + strand at 365.209 kb on + strand at 365.357 kb on + strand, within ydhF at 365.540 kb on - strand, within ydhF at 365.571 kb on + strand, within ydhF at 365.946 kb on + strand at 366.084 kb on + strand at 366.142 kb on - strand at 366.347 kb on + strand, within sodC at 366.347 kb on + strand, within sodC at 366.373 kb on - strand, within sodC at 366.528 kb on + strand, within sodC at 366.628 kb on - strand, within sodC at 366.683 kb on + strand at 366.683 kb on + strand at 366.687 kb on + strand at 366.691 kb on + strand at 366.750 kb on - strand at 366.901 kb on - strand, within ydhK
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98 remove 364,236 - -0.2 364,236 - +0.5 364,308 - nemR JDDGAC_02030 0.17 +0.4 364,356 - nemR JDDGAC_02030 0.25 -0.1 364,479 - nemR JDDGAC_02030 0.46 +0.3 364,540 - nemR JDDGAC_02030 0.56 +0.1 364,540 - nemR JDDGAC_02030 0.56 +0.6 364,540 - nemR JDDGAC_02030 0.56 -0.1 364,565 - nemR JDDGAC_02030 0.60 +0.1 364,565 - nemR JDDGAC_02030 0.60 +0.3 364,605 + nemR JDDGAC_02030 0.67 -0.2 364,606 - nemR JDDGAC_02030 0.67 -2.3 364,606 - nemR JDDGAC_02030 0.67 -0.1 364,606 - nemR JDDGAC_02030 0.67 +0.3 364,669 - nemR JDDGAC_02030 0.77 +0.8 364,781 - -0.8 364,852 - -0.7 364,875 + +0.0 365,173 + +0.5 365,194 + +2.6 365,209 + -1.0 365,357 + ydhF JDDGAC_02040 0.21 -1.0 365,540 - ydhF JDDGAC_02040 0.44 -0.5 365,571 + ydhF JDDGAC_02040 0.48 -1.0 365,946 + +0.3 366,084 + +0.7 366,142 - +0.9 366,347 + sodC JDDGAC_02045 0.34 +0.7 366,347 + sodC JDDGAC_02045 0.34 -0.2 366,373 - sodC JDDGAC_02045 0.39 -0.5 366,528 + sodC JDDGAC_02045 0.68 +0.9 366,628 - sodC JDDGAC_02045 0.87 +2.6 366,683 + -1.0 366,683 + -1.4 366,687 + -1.1 366,691 + -0.0 366,750 - -1.2 366,901 - ydhK JDDGAC_02050 0.10 +1.2
Or see this region's nucleotide sequence