Experiment: Control_ECRC98
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydhP and sodB are separated by 145 nucleotides sodB and mepH are separated by 127 nucleotides mepH and grxD are separated by 334 nucleotides grxD and lhr are separated by 50 nucleotides
JDDGAC_01990: ydhP - Inner membrane transport protein YdhP, at 353,552 to 354,721
ydhP
JDDGAC_01995: sodB - superoxide dismutase [Fe], at 354,867 to 355,448
sodB
JDDGAC_02000: mepH - peptidoglycan DD-endopeptidase MepH, at 355,576 to 356,391
mepH
JDDGAC_02005: grxD - monothiol glutaredoxin 4, at 356,726 to 357,073
grxD
JDDGAC_02010: lhr - ATP-dependent helicase, at 357,124 to 361,740
lhr
Position (kb) 355
356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 354.594 kb on + strand, within ydhP at 354.719 kb on + strand at 354.720 kb on - strand at 354.865 kb on + strand at 354.869 kb on - strand at 354.869 kb on - strand at 354.959 kb on - strand, within sodB at 354.962 kb on - strand, within sodB at 355.220 kb on - strand, within sodB at 355.227 kb on - strand, within sodB at 355.298 kb on + strand, within sodB at 355.298 kb on + strand, within sodB at 355.345 kb on + strand, within sodB at 355.346 kb on - strand, within sodB at 355.415 kb on + strand at 355.420 kb on + strand at 355.434 kb on + strand at 355.435 kb on - strand at 355.453 kb on - strand at 355.477 kb on + strand at 355.478 kb on - strand at 355.635 kb on - strand at 355.690 kb on - strand, within mepH at 355.862 kb on + strand, within mepH at 355.868 kb on + strand, within mepH at 356.059 kb on - strand, within mepH at 356.374 kb on - strand at 356.456 kb on + strand at 356.463 kb on + strand at 356.463 kb on + strand at 356.463 kb on + strand at 356.463 kb on + strand at 356.464 kb on - strand at 356.489 kb on + strand at 356.783 kb on + strand, within grxD at 356.783 kb on + strand, within grxD at 356.996 kb on + strand, within grxD at 356.997 kb on - strand, within grxD at 357.044 kb on + strand at 357.087 kb on - strand at 357.292 kb on + strand at 357.293 kb on - strand at 357.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98 remove 354,594 + ydhP JDDGAC_01990 0.89 -0.5 354,719 + +0.5 354,720 - +1.4 354,865 + +0.5 354,869 - +0.8 354,869 - -1.6 354,959 - sodB JDDGAC_01995 0.16 -0.1 354,962 - sodB JDDGAC_01995 0.16 -0.1 355,220 - sodB JDDGAC_01995 0.61 +0.6 355,227 - sodB JDDGAC_01995 0.62 -3.1 355,298 + sodB JDDGAC_01995 0.74 +0.3 355,298 + sodB JDDGAC_01995 0.74 +2.4 355,345 + sodB JDDGAC_01995 0.82 -0.3 355,346 - sodB JDDGAC_01995 0.82 -0.2 355,415 + -0.2 355,420 + -1.3 355,434 + -0.6 355,435 - -1.2 355,453 - +0.6 355,477 + -0.0 355,478 - -1.3 355,635 - -0.9 355,690 - mepH JDDGAC_02000 0.14 -0.0 355,862 + mepH JDDGAC_02000 0.35 -0.5 355,868 + mepH JDDGAC_02000 0.36 -1.6 356,059 - mepH JDDGAC_02000 0.59 -0.3 356,374 - +1.3 356,456 + -0.1 356,463 + +0.4 356,463 + +0.6 356,463 + -0.3 356,463 + -1.2 356,464 - +0.1 356,489 + +1.0 356,783 + grxD JDDGAC_02005 0.16 -0.4 356,783 + grxD JDDGAC_02005 0.16 -0.2 356,996 + grxD JDDGAC_02005 0.78 +0.1 356,997 - grxD JDDGAC_02005 0.78 -1.4 357,044 + +0.4 357,087 - -0.0 357,292 + -0.2 357,293 - +0.1 357,345 - -1.9
Or see this region's nucleotide sequence