Experiment: Control_ECRC98
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yebG and yebF are separated by 66 nucleotides yebF and JDDGAC_00940 overlap by 87 nucleotides JDDGAC_00940 and JDDGAC_00945 are separated by 36 nucleotides JDDGAC_00945 and yebE are separated by 59 nucleotides yebE and ptrB are separated by 208 nucleotides
JDDGAC_00930: yebG - DNA damage-inducible protein YebG, at 156,661 to 156,951
yebG
JDDGAC_00935: yebF - Protein YebF, at 157,018 to 157,374
yebF
JDDGAC_00940: JDDGAC_00940 - hypothetical protein, at 157,288 to 157,494
_00940
JDDGAC_00945: JDDGAC_00945 - hypothetical protein, at 157,531 to 157,641
_00945
JDDGAC_00950: yebE - Inner membrane protein YebE, at 157,701 to 158,360
yebE
JDDGAC_00955: ptrB - oligopeptidase B, at 158,569 to 160,629
ptrB
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2 at 156.977 kb on + strand at 157.005 kb on + strand at 157.157 kb on + strand, within yebF at 157.168 kb on + strand, within yebF at 157.295 kb on + strand at 157.295 kb on + strand at 157.295 kb on + strand at 157.296 kb on - strand at 157.523 kb on - strand at 157.553 kb on + strand, within JDDGAC_00945 at 157.554 kb on - strand, within JDDGAC_00945 at 157.556 kb on - strand, within JDDGAC_00945 at 157.613 kb on - strand, within JDDGAC_00945 at 157.637 kb on + strand at 157.663 kb on - strand at 157.667 kb on + strand at 157.700 kb on + strand at 157.706 kb on + strand at 157.754 kb on + strand at 157.838 kb on + strand, within yebE at 157.839 kb on - strand, within yebE at 157.859 kb on + strand, within yebE at 157.925 kb on + strand, within yebE at 158.055 kb on - strand, within yebE at 158.449 kb on + strand at 158.459 kb on + strand at 158.471 kb on + strand at 158.485 kb on + strand at 158.537 kb on + strand at 158.538 kb on - strand at 158.538 kb on - strand at 158.539 kb on + strand at 158.540 kb on - strand at 158.631 kb on + strand at 158.635 kb on + strand at 158.635 kb on + strand at 158.636 kb on - strand at 158.636 kb on - strand at 158.700 kb on + strand at 158.704 kb on + strand at 158.704 kb on + strand at 158.705 kb on - strand at 158.829 kb on + strand, within ptrB at 158.852 kb on - strand, within ptrB at 158.857 kb on - strand, within ptrB at 158.860 kb on + strand, within ptrB at 158.861 kb on - strand, within ptrB at 158.988 kb on + strand, within ptrB at 159.127 kb on + strand, within ptrB at 159.130 kb on + strand, within ptrB at 159.238 kb on + strand, within ptrB at 159.241 kb on + strand, within ptrB at 159.274 kb on + strand, within ptrB at 159.274 kb on + strand, within ptrB at 159.279 kb on - strand, within ptrB at 159.279 kb on - strand, within ptrB
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98 remove 156,977 + -1.8 157,005 + +0.2 157,157 + yebF JDDGAC_00935 0.39 -0.5 157,168 + yebF JDDGAC_00935 0.42 +0.1 157,295 + +1.2 157,295 + +0.4 157,295 + +0.1 157,296 - -0.2 157,523 - -1.7 157,553 + JDDGAC_00945 0.20 -0.4 157,554 - JDDGAC_00945 0.21 +2.0 157,556 - JDDGAC_00945 0.23 +2.0 157,613 - JDDGAC_00945 0.74 -0.2 157,637 + +0.1 157,663 - +1.3 157,667 + -1.5 157,700 + -0.8 157,706 + +0.4 157,754 + -2.1 157,838 + yebE JDDGAC_00950 0.21 -1.0 157,839 - yebE JDDGAC_00950 0.21 +0.7 157,859 + yebE JDDGAC_00950 0.24 -2.4 157,925 + yebE JDDGAC_00950 0.34 -1.3 158,055 - yebE JDDGAC_00950 0.54 -0.4 158,449 + -1.4 158,459 + +0.7 158,471 + -0.2 158,485 + +1.6 158,537 + -2.4 158,538 - -2.7 158,538 - -1.7 158,539 + -0.0 158,540 - +0.5 158,631 + -0.8 158,635 + -0.8 158,635 + -1.5 158,636 - +1.8 158,636 - +2.3 158,700 + +1.3 158,704 + +1.0 158,704 + +0.2 158,705 - -0.5 158,829 + ptrB JDDGAC_00955 0.13 +0.4 158,852 - ptrB JDDGAC_00955 0.14 -0.3 158,857 - ptrB JDDGAC_00955 0.14 -1.4 158,860 + ptrB JDDGAC_00955 0.14 +2.1 158,861 - ptrB JDDGAC_00955 0.14 +2.0 158,988 + ptrB JDDGAC_00955 0.20 -1.9 159,127 + ptrB JDDGAC_00955 0.27 -1.3 159,130 + ptrB JDDGAC_00955 0.27 -0.0 159,238 + ptrB JDDGAC_00955 0.32 +0.4 159,241 + ptrB JDDGAC_00955 0.33 +0.2 159,274 + ptrB JDDGAC_00955 0.34 +1.2 159,274 + ptrB JDDGAC_00955 0.34 -1.6 159,279 - ptrB JDDGAC_00955 0.34 -1.2 159,279 - ptrB JDDGAC_00955 0.34 -0.1
Or see this region's nucleotide sequence