Experiment: Control_ECRC98
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yecR and azuC are separated by 261 nucleotides azuC and yecJ are separated by 114 nucleotides yecJ and ftnB are separated by 79 nucleotides ftnB and araF are separated by 796 nucleotides
JDDGAC_00625: yecR - Uncharacterized protein YecR, at 99,542 to 99,865
yecR
JDDGAC_00630: azuC - stress response protein AzuC, at 100,127 to 100,213
azuC
JDDGAC_00635: yecJ - Uncharacterized protein YecJ, at 100,328 to 100,579
yecJ
JDDGAC_00640: ftnB - non-heme ferritin-like protein, at 100,659 to 101,162
ftnB
JDDGAC_00645: araF - arabinose ABC transporter substrate-binding protein AraF, at 101,959 to 102,948
araF
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.668 kb on - strand, within yecR at 99.670 kb on - strand, within yecR at 99.670 kb on - strand, within yecR at 99.670 kb on - strand, within yecR at 99.714 kb on + strand, within yecR at 99.770 kb on - strand, within yecR at 99.817 kb on + strand, within yecR at 99.834 kb on - strand at 99.895 kb on + strand at 99.895 kb on + strand at 99.896 kb on - strand at 99.967 kb on - strand at 100.153 kb on + strand, within azuC at 100.153 kb on + strand, within azuC at 100.162 kb on + strand, within azuC at 100.162 kb on + strand, within azuC at 100.162 kb on + strand, within azuC at 100.163 kb on - strand, within azuC at 100.201 kb on + strand, within azuC at 100.201 kb on + strand, within azuC at 100.293 kb on + strand at 100.294 kb on - strand at 100.477 kb on + strand, within yecJ at 100.478 kb on - strand, within yecJ at 100.719 kb on - strand, within ftnB at 100.988 kb on + strand, within ftnB at 101.015 kb on + strand, within ftnB at 101.015 kb on + strand, within ftnB at 101.167 kb on - strand at 101.167 kb on - strand at 101.296 kb on - strand at 101.400 kb on + strand at 101.750 kb on + strand at 101.772 kb on - strand at 101.842 kb on + strand at 101.872 kb on - strand at 102.007 kb on - strand at 102.120 kb on - strand, within araF at 102.135 kb on + strand, within araF at 102.136 kb on - strand, within araF
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98 remove 99,668 - yecR JDDGAC_00625 0.39 -0.6 99,670 - yecR JDDGAC_00625 0.40 -0.7 99,670 - yecR JDDGAC_00625 0.40 +1.8 99,670 - yecR JDDGAC_00625 0.40 +0.4 99,714 + yecR JDDGAC_00625 0.53 -0.1 99,770 - yecR JDDGAC_00625 0.70 -0.2 99,817 + yecR JDDGAC_00625 0.85 -0.9 99,834 - -2.1 99,895 + -1.3 99,895 + -0.2 99,896 - +0.2 99,967 - +1.8 100,153 + azuC JDDGAC_00630 0.30 +0.4 100,153 + azuC JDDGAC_00630 0.30 +2.0 100,162 + azuC JDDGAC_00630 0.40 +0.2 100,162 + azuC JDDGAC_00630 0.40 -0.7 100,162 + azuC JDDGAC_00630 0.40 +0.5 100,163 - azuC JDDGAC_00630 0.41 -0.4 100,201 + azuC JDDGAC_00630 0.85 -1.9 100,201 + azuC JDDGAC_00630 0.85 -0.5 100,293 + +0.5 100,294 - -0.3 100,477 + yecJ JDDGAC_00635 0.59 +0.7 100,478 - yecJ JDDGAC_00635 0.60 -1.1 100,719 - ftnB JDDGAC_00640 0.12 -1.0 100,988 + ftnB JDDGAC_00640 0.65 -0.9 101,015 + ftnB JDDGAC_00640 0.71 -0.7 101,015 + ftnB JDDGAC_00640 0.71 -0.3 101,167 - +0.4 101,167 - +0.4 101,296 - +0.6 101,400 + -0.5 101,750 + +2.0 101,772 - -0.7 101,842 + +0.3 101,872 - +0.5 102,007 - +0.5 102,120 - araF JDDGAC_00645 0.16 -0.1 102,135 + araF JDDGAC_00645 0.18 -1.9 102,136 - araF JDDGAC_00645 0.18 -2.0
Or see this region's nucleotide sequence