Strain Fitness in Escherichia coli ECRC98 around JDDGAC_25850

Experiment: Bas58

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas58
4,941,838	+				-2.7
4,941,838	+				+0.5
4,941,842	-				-1.7
4,941,917	+				-0.9
4,941,918	-				+0.2
4,941,918	-				-1.5
4,942,459	+	hyfA	JDDGAC_25845	0.85	-1.2
4,942,473	+	hyfA	JDDGAC_25845	0.87	-0.0
4,942,506	+				+0.4
4,942,506	+				-2.5
4,942,506	+				-1.3
4,942,507	-				-0.8
4,942,507	-				-0.9
4,942,507	-				-0.6
4,942,507	-				+1.2
4,942,507	-				-0.2
4,942,507	-				-1.5
4,942,507	-				-0.9
4,942,507	-				-0.9
4,942,751	+				+0.6
4,942,751	+				-0.1
4,942,752	-				-0.0
4,942,920	+	bcp	JDDGAC_25850	0.25	+0.9
4,942,920	+	bcp	JDDGAC_25850	0.25	-1.2
4,942,928	+	bcp	JDDGAC_25850	0.26	-1.3
4,942,929	-	bcp	JDDGAC_25850	0.27	+1.5
4,943,013	+	bcp	JDDGAC_25850	0.44	-1.0
4,943,014	-	bcp	JDDGAC_25850	0.45	-0.3
4,943,235	+				+0.3
4,943,235	+				+1.3
4,943,236	-				-0.2
4,943,276	-				+0.2
4,943,279	+				+0.8
4,943,279	+				-0.1
4,943,280	-				+0.3
4,943,280	-				-1.7
4,943,280	-				-0.5
4,943,308	+				-1.6
4,943,322	-				-1.4
4,943,348	+	gcvR	JDDGAC_25855	0.13	-0.3
4,943,349	-	gcvR	JDDGAC_25855	0.13	-1.0
4,943,349	-	gcvR	JDDGAC_25855	0.13	+0.1
4,943,352	+	gcvR	JDDGAC_25855	0.14	+2.5
4,943,375	+	gcvR	JDDGAC_25855	0.18	-0.2
4,943,523	+	gcvR	JDDGAC_25855	0.43	-0.1
4,943,664	-	gcvR	JDDGAC_25855	0.68	-0.6
4,943,696	+	gcvR	JDDGAC_25855	0.74	+2.3
4,943,697	-	gcvR	JDDGAC_25855	0.74	-1.0
4,943,757	-	gcvR	JDDGAC_25855	0.84	+0.5
4,943,825	-				-2.2
4,943,854	-				-2.3
4,943,905	+				-0.3
4,943,905	+				-0.7
4,943,906	-				-1.1
4,943,906	-				-1.3
4,943,956	+				-1.1
4,943,956	+				+1.8