Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt btsS and btsR overlap by 4 nucleotides btsR and yehS are separated by 46 nucleotides yehS and yehR are separated by 41 nucleotides
JDDGAC_28000: btsS - two-component regulatory system sensor histidine kinase BtsS, at 5,363,589 to 5,365,274
btsS
JDDGAC_28005: btsR - two-component system response regulator BtsR, at 5,365,271 to 5,365,990
btsR
JDDGAC_28010: yehS - Uncharacterized protein YehS, at 5,366,037 to 5,366,507
yehS
JDDGAC_28015: yehR - Uncharacterized lipoprotein YehR, at 5,366,549 to 5,367,010
yehR
Position (kb) 5365
5366 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5364.418 kb on - strand, within btsS at 5364.425 kb on - strand, within btsS at 5364.453 kb on + strand, within btsS at 5364.472 kb on + strand, within btsS at 5364.472 kb on + strand, within btsS at 5364.472 kb on + strand, within btsS at 5364.573 kb on + strand, within btsS at 5364.573 kb on + strand, within btsS at 5364.753 kb on - strand, within btsS at 5364.811 kb on - strand, within btsS at 5364.894 kb on + strand, within btsS at 5364.894 kb on + strand, within btsS at 5364.961 kb on + strand, within btsS at 5364.962 kb on - strand, within btsS at 5365.226 kb on + strand at 5365.227 kb on - strand at 5365.227 kb on - strand at 5365.227 kb on - strand at 5365.230 kb on + strand at 5365.230 kb on + strand at 5365.285 kb on - strand at 5365.496 kb on + strand, within btsR at 5365.496 kb on + strand, within btsR at 5365.498 kb on + strand, within btsR at 5365.526 kb on + strand, within btsR at 5365.527 kb on - strand, within btsR at 5365.535 kb on - strand, within btsR at 5365.688 kb on - strand, within btsR at 5365.706 kb on + strand, within btsR at 5365.761 kb on - strand, within btsR at 5365.807 kb on - strand, within btsR at 5365.834 kb on - strand, within btsR at 5365.875 kb on + strand, within btsR at 5365.925 kb on - strand at 5365.989 kb on - strand at 5366.041 kb on + strand at 5366.041 kb on + strand at 5366.041 kb on + strand at 5366.045 kb on + strand at 5366.045 kb on + strand at 5366.046 kb on - strand at 5366.051 kb on + strand at 5366.091 kb on - strand, within yehS at 5366.106 kb on - strand, within yehS at 5366.120 kb on + strand, within yehS at 5366.292 kb on - strand, within yehS at 5366.461 kb on - strand at 5366.505 kb on + strand at 5366.506 kb on - strand at 5366.603 kb on - strand, within yehR at 5366.603 kb on - strand, within yehR at 5366.609 kb on - strand, within yehR at 5366.709 kb on + strand, within yehR at 5366.710 kb on - strand, within yehR at 5366.710 kb on - strand, within yehR at 5366.710 kb on - strand, within yehR at 5366.721 kb on + strand, within yehR at 5366.806 kb on + strand, within yehR at 5366.871 kb on + strand, within yehR at 5366.872 kb on - strand, within yehR at 5366.877 kb on + strand, within yehR at 5366.877 kb on + strand, within yehR at 5366.878 kb on - strand, within yehR at 5366.878 kb on - strand, within yehR at 5366.878 kb on - strand, within yehR at 5366.881 kb on + strand, within yehR at 5366.882 kb on - strand, within yehR
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,364,418 - btsS JDDGAC_28000 0.49 -0.1 5,364,425 - btsS JDDGAC_28000 0.50 +0.5 5,364,453 + btsS JDDGAC_28000 0.51 +2.2 5,364,472 + btsS JDDGAC_28000 0.52 +1.2 5,364,472 + btsS JDDGAC_28000 0.52 -3.7 5,364,472 + btsS JDDGAC_28000 0.52 +0.5 5,364,573 + btsS JDDGAC_28000 0.58 -0.6 5,364,573 + btsS JDDGAC_28000 0.58 +0.1 5,364,753 - btsS JDDGAC_28000 0.69 -1.7 5,364,811 - btsS JDDGAC_28000 0.72 +2.8 5,364,894 + btsS JDDGAC_28000 0.77 -0.1 5,364,894 + btsS JDDGAC_28000 0.77 +3.1 5,364,961 + btsS JDDGAC_28000 0.81 -2.5 5,364,962 - btsS JDDGAC_28000 0.81 -2.0 5,365,226 + -0.5 5,365,227 - +2.6 5,365,227 - -4.0 5,365,227 - +0.1 5,365,230 + +0.2 5,365,230 + +5.7 5,365,285 - +0.5 5,365,496 + btsR JDDGAC_28005 0.31 -0.3 5,365,496 + btsR JDDGAC_28005 0.31 -1.8 5,365,498 + btsR JDDGAC_28005 0.32 +1.5 5,365,526 + btsR JDDGAC_28005 0.35 +0.9 5,365,527 - btsR JDDGAC_28005 0.36 -2.8 5,365,535 - btsR JDDGAC_28005 0.37 +2.4 5,365,688 - btsR JDDGAC_28005 0.58 -2.0 5,365,706 + btsR JDDGAC_28005 0.60 -0.8 5,365,761 - btsR JDDGAC_28005 0.68 +2.6 5,365,807 - btsR JDDGAC_28005 0.74 +0.3 5,365,834 - btsR JDDGAC_28005 0.78 +1.0 5,365,875 + btsR JDDGAC_28005 0.84 +1.1 5,365,925 - -1.4 5,365,989 - -0.4 5,366,041 + -0.6 5,366,041 + -0.8 5,366,041 + -0.2 5,366,045 + -2.5 5,366,045 + -1.6 5,366,046 - +1.5 5,366,051 + -0.4 5,366,091 - yehS JDDGAC_28010 0.11 +2.3 5,366,106 - yehS JDDGAC_28010 0.15 -0.2 5,366,120 + yehS JDDGAC_28010 0.18 +0.1 5,366,292 - yehS JDDGAC_28010 0.54 -2.1 5,366,461 - +0.6 5,366,505 + -1.0 5,366,506 - -0.4 5,366,603 - yehR JDDGAC_28015 0.12 +1.3 5,366,603 - yehR JDDGAC_28015 0.12 +1.1 5,366,609 - yehR JDDGAC_28015 0.13 +1.4 5,366,709 + yehR JDDGAC_28015 0.35 -0.3 5,366,710 - yehR JDDGAC_28015 0.35 -2.0 5,366,710 - yehR JDDGAC_28015 0.35 +0.0 5,366,710 - yehR JDDGAC_28015 0.35 -0.8 5,366,721 + yehR JDDGAC_28015 0.37 +0.6 5,366,806 + yehR JDDGAC_28015 0.56 -0.3 5,366,871 + yehR JDDGAC_28015 0.70 +0.2 5,366,872 - yehR JDDGAC_28015 0.70 -1.0 5,366,877 + yehR JDDGAC_28015 0.71 -0.4 5,366,877 + yehR JDDGAC_28015 0.71 -0.5 5,366,878 - yehR JDDGAC_28015 0.71 +0.8 5,366,878 - yehR JDDGAC_28015 0.71 -0.4 5,366,878 - yehR JDDGAC_28015 0.71 +2.7 5,366,881 + yehR JDDGAC_28015 0.72 -1.9 5,366,882 - yehR JDDGAC_28015 0.72 -1.1
Or see this region's nucleotide sequence