Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nudF and yqiB are separated by 0 nucleotides yqiB and cpdA are separated by 24 nucleotides cpdA and cpdA overlap by 1 nucleotides cpdA and JDDGAC_22465 are separated by 28 nucleotides
JDDGAC_22445: nudF - ADP-ribose diphosphatase, at 4,293,967 to 4,294,596
nudF
JDDGAC_22450: yqiB - DUF1249 domain-containing protein, at 4,294,597 to 4,295,019
yqiB
JDDGAC_22455: cpdA - 3',5'-cyclic-AMP phosphodiesterase, at 4,295,044 to 4,295,871
cpdA
JDDGAC_22460: cpdA - 3',5'-cyclic-AMP phosphodiesterase, at 4,295,871 to 4,296,452
cpdA
JDDGAC_22465: JDDGAC_22465 - DNA topoisomerase 4 subunit B, at 4,296,481 to 4,298,373
_22465
Position (kb) 4295
4296 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4294.069 kb on - strand, within nudF at 4294.085 kb on + strand, within nudF at 4294.213 kb on + strand, within nudF at 4294.349 kb on + strand, within nudF at 4294.350 kb on - strand, within nudF at 4294.350 kb on - strand, within nudF at 4294.350 kb on - strand, within nudF at 4294.395 kb on + strand, within nudF at 4294.395 kb on + strand, within nudF at 4294.431 kb on + strand, within nudF at 4294.432 kb on - strand, within nudF at 4294.461 kb on + strand, within nudF at 4294.479 kb on - strand, within nudF at 4294.495 kb on + strand, within nudF at 4294.495 kb on + strand, within nudF at 4294.496 kb on - strand, within nudF at 4294.496 kb on - strand, within nudF at 4294.607 kb on - strand at 4294.704 kb on - strand, within yqiB at 4294.704 kb on - strand, within yqiB at 4294.708 kb on + strand, within yqiB at 4294.708 kb on + strand, within yqiB at 4294.709 kb on - strand, within yqiB at 4294.760 kb on - strand, within yqiB at 4294.760 kb on - strand, within yqiB at 4294.764 kb on + strand, within yqiB at 4294.765 kb on - strand, within yqiB at 4294.778 kb on + strand, within yqiB at 4294.778 kb on + strand, within yqiB at 4294.778 kb on + strand, within yqiB at 4294.779 kb on - strand, within yqiB at 4294.804 kb on + strand, within yqiB at 4294.805 kb on - strand, within yqiB at 4294.805 kb on - strand, within yqiB at 4294.838 kb on - strand, within yqiB at 4294.838 kb on - strand, within yqiB at 4294.915 kb on - strand, within yqiB at 4295.017 kb on + strand at 4295.032 kb on + strand at 4295.032 kb on + strand at 4295.032 kb on + strand at 4295.237 kb on + strand, within cpdA at 4295.347 kb on + strand, within cpdA at 4295.347 kb on + strand, within cpdA at 4295.347 kb on + strand, within cpdA at 4295.347 kb on + strand, within cpdA at 4295.348 kb on - strand, within cpdA at 4295.518 kb on - strand, within cpdA at 4295.546 kb on + strand, within cpdA at 4295.559 kb on + strand, within cpdA at 4295.559 kb on + strand, within cpdA at 4295.559 kb on + strand, within cpdA at 4295.635 kb on + strand, within cpdA at 4295.635 kb on + strand, within cpdA at 4295.653 kb on - strand, within cpdA at 4295.745 kb on + strand, within cpdA at 4295.754 kb on + strand, within cpdA at 4295.754 kb on + strand, within cpdA at 4295.754 kb on + strand, within cpdA at 4295.755 kb on - strand, within cpdA at 4295.786 kb on + strand, within cpdA at 4295.787 kb on - strand, within cpdA at 4295.891 kb on - strand at 4296.063 kb on - strand, within cpdA at 4296.091 kb on - strand, within cpdA at 4296.136 kb on + strand, within cpdA at 4296.213 kb on + strand, within cpdA at 4296.213 kb on + strand, within cpdA at 4296.213 kb on + strand, within cpdA at 4296.213 kb on + strand, within cpdA at 4296.213 kb on + strand, within cpdA at 4296.214 kb on - strand, within cpdA at 4296.214 kb on - strand, within cpdA at 4296.214 kb on - strand, within cpdA at 4296.233 kb on + strand, within cpdA at 4296.237 kb on + strand, within cpdA at 4296.345 kb on + strand, within cpdA at 4296.370 kb on + strand, within cpdA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 4,294,069 - nudF JDDGAC_22445 0.16 +0.9 4,294,085 + nudF JDDGAC_22445 0.19 +0.5 4,294,213 + nudF JDDGAC_22445 0.39 +0.3 4,294,349 + nudF JDDGAC_22445 0.61 +0.7 4,294,350 - nudF JDDGAC_22445 0.61 -1.5 4,294,350 - nudF JDDGAC_22445 0.61 -1.8 4,294,350 - nudF JDDGAC_22445 0.61 -3.6 4,294,395 + nudF JDDGAC_22445 0.68 +0.7 4,294,395 + nudF JDDGAC_22445 0.68 +2.1 4,294,431 + nudF JDDGAC_22445 0.74 -0.8 4,294,432 - nudF JDDGAC_22445 0.74 +0.6 4,294,461 + nudF JDDGAC_22445 0.78 +0.1 4,294,479 - nudF JDDGAC_22445 0.81 -0.1 4,294,495 + nudF JDDGAC_22445 0.84 +1.0 4,294,495 + nudF JDDGAC_22445 0.84 +0.9 4,294,496 - nudF JDDGAC_22445 0.84 +1.9 4,294,496 - nudF JDDGAC_22445 0.84 -2.2 4,294,607 - -0.1 4,294,704 - yqiB JDDGAC_22450 0.25 +0.3 4,294,704 - yqiB JDDGAC_22450 0.25 -0.8 4,294,708 + yqiB JDDGAC_22450 0.26 +0.4 4,294,708 + yqiB JDDGAC_22450 0.26 +1.1 4,294,709 - yqiB JDDGAC_22450 0.26 -0.0 4,294,760 - yqiB JDDGAC_22450 0.39 +0.6 4,294,760 - yqiB JDDGAC_22450 0.39 +0.6 4,294,764 + yqiB JDDGAC_22450 0.39 -0.8 4,294,765 - yqiB JDDGAC_22450 0.40 +0.5 4,294,778 + yqiB JDDGAC_22450 0.43 +0.4 4,294,778 + yqiB JDDGAC_22450 0.43 +1.0 4,294,778 + yqiB JDDGAC_22450 0.43 -2.5 4,294,779 - yqiB JDDGAC_22450 0.43 +1.1 4,294,804 + yqiB JDDGAC_22450 0.49 +2.7 4,294,805 - yqiB JDDGAC_22450 0.49 -0.8 4,294,805 - yqiB JDDGAC_22450 0.49 -0.2 4,294,838 - yqiB JDDGAC_22450 0.57 +0.4 4,294,838 - yqiB JDDGAC_22450 0.57 +2.8 4,294,915 - yqiB JDDGAC_22450 0.75 -2.8 4,295,017 + +1.1 4,295,032 + +3.8 4,295,032 + -2.4 4,295,032 + +1.1 4,295,237 + cpdA JDDGAC_22455 0.23 +0.1 4,295,347 + cpdA JDDGAC_22455 0.37 -1.1 4,295,347 + cpdA JDDGAC_22455 0.37 -0.1 4,295,347 + cpdA JDDGAC_22455 0.37 -0.9 4,295,347 + cpdA JDDGAC_22455 0.37 +0.1 4,295,348 - cpdA JDDGAC_22455 0.37 -2.7 4,295,518 - cpdA JDDGAC_22455 0.57 -0.5 4,295,546 + cpdA JDDGAC_22455 0.61 -2.3 4,295,559 + cpdA JDDGAC_22455 0.62 +0.6 4,295,559 + cpdA JDDGAC_22455 0.62 -0.2 4,295,559 + cpdA JDDGAC_22455 0.62 -0.7 4,295,635 + cpdA JDDGAC_22455 0.71 +0.8 4,295,635 + cpdA JDDGAC_22455 0.71 -1.8 4,295,653 - cpdA JDDGAC_22455 0.74 -0.1 4,295,745 + cpdA JDDGAC_22455 0.85 +0.7 4,295,754 + cpdA JDDGAC_22455 0.86 -2.7 4,295,754 + cpdA JDDGAC_22455 0.86 -3.4 4,295,754 + cpdA JDDGAC_22455 0.86 -1.4 4,295,755 - cpdA JDDGAC_22455 0.86 +1.1 4,295,786 + cpdA JDDGAC_22455 0.90 -1.1 4,295,787 - cpdA JDDGAC_22455 0.90 -0.4 4,295,891 - +0.1 4,296,063 - cpdA JDDGAC_22460 0.33 +1.0 4,296,091 - cpdA JDDGAC_22460 0.38 -1.6 4,296,136 + cpdA JDDGAC_22460 0.46 +0.2 4,296,213 + cpdA JDDGAC_22460 0.59 -2.0 4,296,213 + cpdA JDDGAC_22460 0.59 -3.2 4,296,213 + cpdA JDDGAC_22460 0.59 +0.5 4,296,213 + cpdA JDDGAC_22460 0.59 +0.8 4,296,213 + cpdA JDDGAC_22460 0.59 -1.3 4,296,214 - cpdA JDDGAC_22460 0.59 -0.1 4,296,214 - cpdA JDDGAC_22460 0.59 -1.3 4,296,214 - cpdA JDDGAC_22460 0.59 -1.6 4,296,233 + cpdA JDDGAC_22460 0.62 -2.3 4,296,237 + cpdA JDDGAC_22460 0.63 -0.5 4,296,345 + cpdA JDDGAC_22460 0.81 -2.7 4,296,370 + cpdA JDDGAC_22460 0.86 +0.8
Or see this region's nucleotide sequence