Strain Fitness in Escherichia coli ECRC98 around JDDGAC_11260

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntentF and ybdZ overlap by 4 nucleotidesybdZ and fes are separated by 2 nucleotides JDDGAC_11255: entF - enterobactin synthase multienzyme complex component, ATP-dependent, at 2,025,542 to 2,029,423 entF JDDGAC_11260: ybdZ - Enterobactin biosynthesis protein YbdZ, at 2,029,420 to 2,029,638 ybdZ JDDGAC_11265: fes - enterobactin/ferric enterobactin esterase, at 2,029,641 to 2,030,843 fes Position (kb) 2029 2030Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2028.542 kb on + strand, within entFat 2028.598 kb on + strand, within entFat 2028.605 kb on - strand, within entFat 2028.605 kb on - strand, within entFat 2028.619 kb on - strand, within entFat 2028.671 kb on + strand, within entFat 2028.750 kb on - strand, within entFat 2028.893 kb on + strand, within entFat 2028.893 kb on + strand, within entFat 2028.894 kb on - strand, within entFat 2029.056 kb on - strandat 2029.124 kb on + strandat 2029.229 kb on - strandat 2029.256 kb on - strandat 2029.256 kb on - strandat 2029.330 kb on - strandat 2029.356 kb on - strandat 2029.410 kb on - strandat 2029.465 kb on - strand, within ybdZat 2029.626 kb on + strandat 2029.758 kb on + strandat 2029.767 kb on + strand, within fesat 2029.869 kb on + strand, within fesat 2029.881 kb on + strand, within fesat 2029.942 kb on - strand, within fesat 2030.071 kb on - strand, within fesat 2030.105 kb on + strand, within fesat 2030.278 kb on - strand, within fesat 2030.355 kb on + strand, within fes

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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2,028,542 + entF JDDGAC_11255 0.77 -3.2
2,028,598 + entF JDDGAC_11255 0.79 +0.2
2,028,605 - entF JDDGAC_11255 0.79 -2.9
2,028,605 - entF JDDGAC_11255 0.79 -0.7
2,028,619 - entF JDDGAC_11255 0.79 -0.5
2,028,671 + entF JDDGAC_11255 0.81 +0.7
2,028,750 - entF JDDGAC_11255 0.83 +0.5
2,028,893 + entF JDDGAC_11255 0.86 +0.6
2,028,893 + entF JDDGAC_11255 0.86 -3.0
2,028,894 - entF JDDGAC_11255 0.86 +0.0
2,029,056 - -2.7
2,029,124 + +2.1
2,029,229 - +0.0
2,029,256 - -1.6
2,029,256 - +0.1
2,029,330 - +0.2
2,029,356 - -1.4
2,029,410 - -0.0
2,029,465 - ybdZ JDDGAC_11260 0.21 -1.2
2,029,626 + -0.3
2,029,758 + -3.0
2,029,767 + fes JDDGAC_11265 0.10 +4.0
2,029,869 + fes JDDGAC_11265 0.19 +0.2
2,029,881 + fes JDDGAC_11265 0.20 -0.3
2,029,942 - fes JDDGAC_11265 0.25 +0.2
2,030,071 - fes JDDGAC_11265 0.36 -2.4
2,030,105 + fes JDDGAC_11265 0.39 +0.8
2,030,278 - fes JDDGAC_11265 0.53 +0.1
2,030,355 + fes JDDGAC_11265 0.59 -1.4

Or see this region's nucleotide sequence