Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03705

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_03700 and fimA are separated by 973 nucleotidesfimA and fimC are separated by 360 nucleotides JDDGAC_03700: JDDGAC_03700 - Protein HipA, at 622,773 to 623,795 _03700 JDDGAC_03705: fimA - type 1 fimbrial major subunit FimA, at 624,769 to 625,332 fimA JDDGAC_03710: fimC - fimbrial chaperone protein FimC, at 625,693 to 626,403 fimC Position (kb) 624 625 626Strain fitness (log2 ratio) -3 -2 -1 0 1at 624.397 kb on + strandat 625.021 kb on - strand, within fimAat 625.181 kb on + strand, within fimAat 625.187 kb on + strand, within fimAat 625.449 kb on + strandat 626.053 kb on - strand, within fimC

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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624,397 + +1.3
625,021 - fimA JDDGAC_03705 0.45 -0.2
625,181 + fimA JDDGAC_03705 0.73 -2.8
625,187 + fimA JDDGAC_03705 0.74 -2.4
625,449 + +1.1
626,053 - fimC JDDGAC_03710 0.51 -1.2

Or see this region's nucleotide sequence