Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt edd and kdgA are separated by 36 nucleotides kdgA and purT are separated by 55 nucleotides
JDDGAC_00915: edd - phosphogluconate dehydratase, at 152,804 to 154,615
edd
JDDGAC_00920: kdgA - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 154,652 to 155,293
kdgA
JDDGAC_00925: purT - formate-dependent phosphoribosylglycinamide formyltransferase, at 155,349 to 156,527
purT
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 153.706 kb on + strand, within edd at 153.792 kb on + strand, within edd at 153.835 kb on + strand, within edd at 153.916 kb on + strand, within edd at 153.967 kb on + strand, within edd at 154.175 kb on - strand, within edd at 154.268 kb on - strand, within edd at 154.290 kb on + strand, within edd at 154.291 kb on - strand, within edd at 154.369 kb on + strand, within edd at 154.369 kb on + strand, within edd at 154.391 kb on + strand, within edd at 154.391 kb on + strand, within edd at 154.604 kb on - strand at 154.975 kb on + strand, within kdgA at 155.156 kb on + strand, within kdgA at 155.251 kb on + strand at 155.251 kb on + strand at 155.254 kb on + strand at 155.337 kb on + strand at 155.338 kb on - strand at 155.365 kb on - strand at 155.497 kb on - strand, within purT at 155.575 kb on + strand, within purT at 155.616 kb on + strand, within purT at 155.616 kb on + strand, within purT at 155.617 kb on - strand, within purT at 155.617 kb on - strand, within purT at 155.617 kb on - strand, within purT at 155.617 kb on - strand, within purT at 155.865 kb on + strand, within purT at 156.027 kb on - strand, within purT at 156.066 kb on + strand, within purT at 156.273 kb on - strand, within purT
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 153,706 + edd JDDGAC_00915 0.50 -0.5 153,792 + edd JDDGAC_00915 0.55 -0.6 153,835 + edd JDDGAC_00915 0.57 +0.7 153,916 + edd JDDGAC_00915 0.61 -3.0 153,967 + edd JDDGAC_00915 0.64 +1.4 154,175 - edd JDDGAC_00915 0.76 -0.2 154,268 - edd JDDGAC_00915 0.81 -0.1 154,290 + edd JDDGAC_00915 0.82 -1.1 154,291 - edd JDDGAC_00915 0.82 +0.5 154,369 + edd JDDGAC_00915 0.86 -0.7 154,369 + edd JDDGAC_00915 0.86 -3.4 154,391 + edd JDDGAC_00915 0.88 +0.0 154,391 + edd JDDGAC_00915 0.88 -0.2 154,604 - -0.3 154,975 + kdgA JDDGAC_00920 0.50 -2.5 155,156 + kdgA JDDGAC_00920 0.79 -2.1 155,251 + -1.8 155,251 + -0.9 155,254 + -3.4 155,337 + +0.0 155,338 - -2.2 155,365 - -0.1 155,497 - purT JDDGAC_00925 0.13 +0.9 155,575 + purT JDDGAC_00925 0.19 +1.6 155,616 + purT JDDGAC_00925 0.23 -0.2 155,616 + purT JDDGAC_00925 0.23 +0.8 155,617 - purT JDDGAC_00925 0.23 +0.9 155,617 - purT JDDGAC_00925 0.23 +1.4 155,617 - purT JDDGAC_00925 0.23 +0.9 155,617 - purT JDDGAC_00925 0.23 +0.1 155,865 + purT JDDGAC_00925 0.44 -0.0 156,027 - purT JDDGAC_00925 0.58 -0.8 156,066 + purT JDDGAC_00925 0.61 -1.9 156,273 - purT JDDGAC_00925 0.78 -1.7
Or see this region's nucleotide sequence