Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeA and yeeX are separated by 171 nucleotides yeeX and yeeW are separated by 897 nucleotides
JDDGAC_29150: yeeA - Inner membrane protein YeeA, at 5,563,551 to 5,564,609
yeeA
JDDGAC_29155: yeeX - DUF496 domain-containing protein, at 5,564,781 to 5,565,110
yeeX
JDDGAC_29160: yeeW - Protein YeeW, at 5,566,008 to 5,566,202
yeeW
Position (kb) 5564
5565
5566 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5563.795 kb on + strand, within yeeA at 5563.822 kb on + strand, within yeeA at 5564.091 kb on + strand, within yeeA at 5564.129 kb on - strand, within yeeA at 5564.241 kb on + strand, within yeeA at 5564.241 kb on + strand, within yeeA at 5564.241 kb on + strand, within yeeA at 5564.241 kb on + strand, within yeeA at 5564.242 kb on - strand, within yeeA at 5564.242 kb on - strand, within yeeA at 5564.242 kb on - strand, within yeeA at 5564.242 kb on - strand, within yeeA at 5564.242 kb on - strand, within yeeA at 5564.250 kb on - strand, within yeeA at 5564.250 kb on - strand, within yeeA at 5564.280 kb on - strand, within yeeA at 5564.280 kb on - strand, within yeeA at 5564.280 kb on - strand, within yeeA at 5564.304 kb on + strand, within yeeA at 5564.383 kb on + strand, within yeeA at 5564.410 kb on - strand, within yeeA at 5564.526 kb on + strand at 5564.526 kb on + strand at 5564.526 kb on + strand at 5564.527 kb on - strand at 5564.607 kb on + strand at 5564.664 kb on + strand at 5564.670 kb on - strand at 5564.707 kb on + strand at 5564.707 kb on + strand at 5564.713 kb on + strand at 5564.744 kb on - strand at 5564.744 kb on - strand at 5564.790 kb on - strand at 5564.840 kb on + strand, within yeeX at 5564.840 kb on + strand, within yeeX at 5564.841 kb on - strand, within yeeX at 5564.995 kb on - strand, within yeeX at 5565.077 kb on + strand, within yeeX at 5565.256 kb on - strand at 5565.267 kb on + strand at 5565.286 kb on + strand at 5565.286 kb on + strand at 5565.287 kb on - strand at 5565.287 kb on - strand at 5565.335 kb on - strand at 5565.501 kb on + strand at 5565.512 kb on + strand at 5565.523 kb on + strand at 5565.523 kb on + strand at 5565.592 kb on - strand at 5565.752 kb on + strand at 5565.817 kb on + strand at 5565.819 kb on + strand at 5565.838 kb on + strand at 5565.944 kb on + strand at 5565.944 kb on + strand at 5565.984 kb on + strand at 5565.985 kb on - strand at 5565.985 kb on - strand at 5565.987 kb on - strand at 5565.987 kb on - strand at 5566.034 kb on - strand, within yeeW at 5566.103 kb on + strand, within yeeW at 5566.104 kb on - strand, within yeeW
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 5,563,795 + yeeA JDDGAC_29150 0.23 -2.2 5,563,822 + yeeA JDDGAC_29150 0.26 +0.8 5,564,091 + yeeA JDDGAC_29150 0.51 +0.4 5,564,129 - yeeA JDDGAC_29150 0.55 +1.0 5,564,241 + yeeA JDDGAC_29150 0.65 +1.0 5,564,241 + yeeA JDDGAC_29150 0.65 +1.0 5,564,241 + yeeA JDDGAC_29150 0.65 -0.6 5,564,241 + yeeA JDDGAC_29150 0.65 -0.5 5,564,242 - yeeA JDDGAC_29150 0.65 +0.6 5,564,242 - yeeA JDDGAC_29150 0.65 +0.2 5,564,242 - yeeA JDDGAC_29150 0.65 -1.6 5,564,242 - yeeA JDDGAC_29150 0.65 +1.1 5,564,242 - yeeA JDDGAC_29150 0.65 -3.9 5,564,250 - yeeA JDDGAC_29150 0.66 -1.5 5,564,250 - yeeA JDDGAC_29150 0.66 -0.3 5,564,280 - yeeA JDDGAC_29150 0.69 +1.9 5,564,280 - yeeA JDDGAC_29150 0.69 +0.8 5,564,280 - yeeA JDDGAC_29150 0.69 +0.4 5,564,304 + yeeA JDDGAC_29150 0.71 -0.5 5,564,383 + yeeA JDDGAC_29150 0.79 -1.2 5,564,410 - yeeA JDDGAC_29150 0.81 -1.1 5,564,526 + +1.3 5,564,526 + -0.1 5,564,526 + +0.3 5,564,527 - +3.4 5,564,607 + -0.3 5,564,664 + +0.2 5,564,670 - +0.4 5,564,707 + -0.6 5,564,707 + +2.4 5,564,713 + -0.7 5,564,744 - -0.2 5,564,744 - -1.6 5,564,790 - +0.4 5,564,840 + yeeX JDDGAC_29155 0.18 -1.3 5,564,840 + yeeX JDDGAC_29155 0.18 -3.3 5,564,841 - yeeX JDDGAC_29155 0.18 -1.1 5,564,995 - yeeX JDDGAC_29155 0.65 +0.8 5,565,077 + yeeX JDDGAC_29155 0.90 +0.3 5,565,256 - -0.2 5,565,267 + -1.5 5,565,286 + +0.5 5,565,286 + +0.0 5,565,287 - +1.0 5,565,287 - -0.3 5,565,335 - +0.9 5,565,501 + -1.3 5,565,512 + +0.1 5,565,523 + -0.3 5,565,523 + -1.5 5,565,592 - +0.2 5,565,752 + +1.5 5,565,817 + +0.7 5,565,819 + +0.5 5,565,838 + +0.0 5,565,944 + +1.2 5,565,944 + -2.7 5,565,984 + +0.7 5,565,985 - -1.0 5,565,985 - +0.7 5,565,987 - +0.8 5,565,987 - -0.1 5,566,034 - yeeW JDDGAC_29160 0.13 +1.5 5,566,103 + yeeW JDDGAC_29160 0.49 -2.9 5,566,104 - yeeW JDDGAC_29160 0.49 +2.4
Or see this region's nucleotide sequence