Strain Fitness in Escherichia coli ECRC98 around JDDGAC_29035

Experiment: WM_Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_29030 and JDDGAC_29035 overlap by 4 nucleotidesJDDGAC_29035 and JDDGAC_29040 are separated by 9 nucleotidesJDDGAC_29040 and JDDGAC_29045 overlap by 4 nucleotidesJDDGAC_29045 and JDDGAC_29050 overlap by 4 nucleotides JDDGAC_29030: JDDGAC_29030 - Putative prophage portal protein, at 5,540,867 to 5,542,090 _29030 JDDGAC_29035: JDDGAC_29035 - head-tail connector protein, at 5,542,087 to 5,542,413 _29035 JDDGAC_29040: JDDGAC_29040 - phage head closure protein, at 5,542,423 to 5,542,773 _29040 JDDGAC_29045: JDDGAC_29045 - phage portal protein, at 5,542,770 to 5,543,216 _29045 JDDGAC_29050: JDDGAC_29050 - DUF3168 domain-containing protein, at 5,543,213 to 5,543,557 _29050 Position (kb) 5542 5543Strain fitness (log2 ratio) -2 -1 0 1at 5541.920 kb on + strand, within JDDGAC_29030at 5541.964 kb on + strand, within JDDGAC_29030at 5542.004 kb on - strandat 5542.222 kb on - strand, within JDDGAC_29035at 5542.457 kb on + strandat 5542.457 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
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5,541,920 + JDDGAC_29030 0.86 +1.7
5,541,964 + JDDGAC_29030 0.90 -1.7
5,542,004 - -0.3
5,542,222 - JDDGAC_29035 0.41 -1.8
5,542,457 + +0.8
5,542,457 + +1.3

Or see this region's nucleotide sequence