Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt btsS and btsR overlap by 4 nucleotides btsR and yehS are separated by 46 nucleotides yehS and yehR are separated by 41 nucleotides yehR and yehQ are separated by 124 nucleotides
JDDGAC_28000: btsS - two-component regulatory system sensor histidine kinase BtsS, at 5,363,589 to 5,365,274
btsS
JDDGAC_28005: btsR - two-component system response regulator BtsR, at 5,365,271 to 5,365,990
btsR
JDDGAC_28010: yehS - Uncharacterized protein YehS, at 5,366,037 to 5,366,507
yehS
JDDGAC_28015: yehR - Uncharacterized lipoprotein YehR, at 5,366,549 to 5,367,010
yehR
JDDGAC_28020: yehQ - Protein YehQ, at 5,367,135 to 5,369,138
yehQ
Position (kb) 5366
5367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5365.226 kb on + strand at 5365.227 kb on - strand at 5365.227 kb on - strand at 5365.227 kb on - strand at 5365.230 kb on + strand at 5365.230 kb on + strand at 5365.285 kb on - strand at 5365.496 kb on + strand, within btsR at 5365.496 kb on + strand, within btsR at 5365.498 kb on + strand, within btsR at 5365.526 kb on + strand, within btsR at 5365.527 kb on - strand, within btsR at 5365.535 kb on - strand, within btsR at 5365.688 kb on - strand, within btsR at 5365.706 kb on + strand, within btsR at 5365.761 kb on - strand, within btsR at 5365.807 kb on - strand, within btsR at 5365.834 kb on - strand, within btsR at 5365.875 kb on + strand, within btsR at 5365.925 kb on - strand at 5365.989 kb on - strand at 5366.041 kb on + strand at 5366.041 kb on + strand at 5366.041 kb on + strand at 5366.045 kb on + strand at 5366.045 kb on + strand at 5366.046 kb on - strand at 5366.051 kb on + strand at 5366.091 kb on - strand, within yehS at 5366.106 kb on - strand, within yehS at 5366.120 kb on + strand, within yehS at 5366.292 kb on - strand, within yehS at 5366.461 kb on - strand at 5366.505 kb on + strand at 5366.506 kb on - strand at 5366.603 kb on - strand, within yehR at 5366.603 kb on - strand, within yehR at 5366.609 kb on - strand, within yehR at 5366.709 kb on + strand, within yehR at 5366.710 kb on - strand, within yehR at 5366.710 kb on - strand, within yehR at 5366.710 kb on - strand, within yehR at 5366.721 kb on + strand, within yehR at 5366.806 kb on + strand, within yehR at 5366.871 kb on + strand, within yehR at 5366.872 kb on - strand, within yehR at 5366.877 kb on + strand, within yehR at 5366.877 kb on + strand, within yehR at 5366.878 kb on - strand, within yehR at 5366.878 kb on - strand, within yehR at 5366.878 kb on - strand, within yehR at 5366.881 kb on + strand, within yehR at 5366.882 kb on - strand, within yehR at 5366.995 kb on + strand at 5367.062 kb on - strand at 5367.063 kb on + strand at 5367.065 kb on + strand at 5367.065 kb on + strand at 5367.065 kb on + strand at 5367.065 kb on + strand at 5367.066 kb on - strand at 5367.066 kb on - strand at 5367.066 kb on - strand at 5367.071 kb on - strand at 5367.076 kb on + strand at 5367.132 kb on - strand at 5367.163 kb on - strand at 5367.240 kb on + strand at 5367.354 kb on + strand, within yehQ at 5367.355 kb on - strand, within yehQ at 5367.420 kb on + strand, within yehQ at 5367.484 kb on - strand, within yehQ
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 5,365,226 + -1.1 5,365,227 - +2.4 5,365,227 - +0.9 5,365,227 - -1.7 5,365,230 + -2.0 5,365,230 + +4.4 5,365,285 - +1.0 5,365,496 + btsR JDDGAC_28005 0.31 -1.2 5,365,496 + btsR JDDGAC_28005 0.31 -0.4 5,365,498 + btsR JDDGAC_28005 0.32 +1.0 5,365,526 + btsR JDDGAC_28005 0.35 -1.7 5,365,527 - btsR JDDGAC_28005 0.36 +0.3 5,365,535 - btsR JDDGAC_28005 0.37 +0.1 5,365,688 - btsR JDDGAC_28005 0.58 +1.4 5,365,706 + btsR JDDGAC_28005 0.60 -0.4 5,365,761 - btsR JDDGAC_28005 0.68 +1.4 5,365,807 - btsR JDDGAC_28005 0.74 -1.2 5,365,834 - btsR JDDGAC_28005 0.78 +0.6 5,365,875 + btsR JDDGAC_28005 0.84 -0.1 5,365,925 - +1.5 5,365,989 - -0.2 5,366,041 + -0.7 5,366,041 + -0.6 5,366,041 + +0.6 5,366,045 + -0.1 5,366,045 + +1.0 5,366,046 - +1.1 5,366,051 + -0.6 5,366,091 - yehS JDDGAC_28010 0.11 +1.9 5,366,106 - yehS JDDGAC_28010 0.15 -3.6 5,366,120 + yehS JDDGAC_28010 0.18 -2.4 5,366,292 - yehS JDDGAC_28010 0.54 -2.3 5,366,461 - +0.4 5,366,505 + -0.2 5,366,506 - -0.6 5,366,603 - yehR JDDGAC_28015 0.12 -0.3 5,366,603 - yehR JDDGAC_28015 0.12 -0.5 5,366,609 - yehR JDDGAC_28015 0.13 +0.1 5,366,709 + yehR JDDGAC_28015 0.35 -0.2 5,366,710 - yehR JDDGAC_28015 0.35 +0.6 5,366,710 - yehR JDDGAC_28015 0.35 -1.3 5,366,710 - yehR JDDGAC_28015 0.35 -1.1 5,366,721 + yehR JDDGAC_28015 0.37 +1.2 5,366,806 + yehR JDDGAC_28015 0.56 -0.7 5,366,871 + yehR JDDGAC_28015 0.70 +0.0 5,366,872 - yehR JDDGAC_28015 0.70 +0.8 5,366,877 + yehR JDDGAC_28015 0.71 +0.0 5,366,877 + yehR JDDGAC_28015 0.71 -2.2 5,366,878 - yehR JDDGAC_28015 0.71 +0.8 5,366,878 - yehR JDDGAC_28015 0.71 -2.2 5,366,878 - yehR JDDGAC_28015 0.71 +2.4 5,366,881 + yehR JDDGAC_28015 0.72 -0.5 5,366,882 - yehR JDDGAC_28015 0.72 -1.3 5,366,995 + +0.4 5,367,062 - -3.4 5,367,063 + -0.3 5,367,065 + +0.6 5,367,065 + -0.8 5,367,065 + +0.0 5,367,065 + -0.7 5,367,066 - +0.7 5,367,066 - +0.9 5,367,066 - -3.0 5,367,071 - -1.1 5,367,076 + +0.8 5,367,132 - -0.6 5,367,163 - -0.5 5,367,240 + -0.6 5,367,354 + yehQ JDDGAC_28020 0.11 -0.8 5,367,355 - yehQ JDDGAC_28020 0.11 -0.1 5,367,420 + yehQ JDDGAC_28020 0.14 +1.4 5,367,484 - yehQ JDDGAC_28020 0.17 -0.4
Or see this region's nucleotide sequence