Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_27720 and JDDGAC_27725 are separated by 75 nucleotides JDDGAC_27725 and JDDGAC_27730 are separated by 587 nucleotides JDDGAC_27730 and JDDGAC_27735 are separated by 106 nucleotides
JDDGAC_27720: JDDGAC_27720 - host-nuclease inhibitor protein Gam, at 5,323,750 to 5,324,046
_27720
JDDGAC_27725: JDDGAC_27725 - cell division inhibitor protein, at 5,324,122 to 5,324,328
_27725
JDDGAC_27730: JDDGAC_27730 - SIR2-like domain-containing protein, at 5,324,916 to 5,326,523
_27730
JDDGAC_27735: JDDGAC_27735 - HTH cro/C1-type domain-containing protein, at 5,326,630 to 5,327,115
_27735
Position (kb) 5324
5325
5326
5327 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5324.033 kb on + strand at 5324.033 kb on + strand at 5324.036 kb on + strand at 5324.102 kb on + strand at 5324.183 kb on + strand, within JDDGAC_27725 at 5324.183 kb on + strand, within JDDGAC_27725 at 5324.184 kb on - strand, within JDDGAC_27725 at 5324.229 kb on + strand, within JDDGAC_27725 at 5324.363 kb on + strand at 5324.365 kb on + strand at 5324.416 kb on + strand at 5324.417 kb on - strand at 5324.661 kb on + strand at 5324.662 kb on - strand at 5324.683 kb on + strand at 5325.565 kb on + strand, within JDDGAC_27730 at 5325.581 kb on - strand, within JDDGAC_27730 at 5325.645 kb on - strand, within JDDGAC_27730 at 5325.717 kb on - strand, within JDDGAC_27730 at 5325.858 kb on - strand, within JDDGAC_27730 at 5326.531 kb on - strand at 5327.469 kb on - strand at 5327.498 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 5,324,033 + -1.8 5,324,033 + +0.7 5,324,036 + -1.6 5,324,102 + -0.8 5,324,183 + JDDGAC_27725 0.29 -3.2 5,324,183 + JDDGAC_27725 0.29 -0.0 5,324,184 - JDDGAC_27725 0.30 -0.0 5,324,229 + JDDGAC_27725 0.52 -0.4 5,324,363 + -4.6 5,324,365 + +0.0 5,324,416 + -1.3 5,324,417 - -0.9 5,324,661 + -2.7 5,324,662 - -0.4 5,324,683 + -1.4 5,325,565 + JDDGAC_27730 0.40 -1.2 5,325,581 - JDDGAC_27730 0.41 -1.1 5,325,645 - JDDGAC_27730 0.45 -0.5 5,325,717 - JDDGAC_27730 0.50 -0.8 5,325,858 - JDDGAC_27730 0.59 -0.3 5,326,531 - +0.2 5,327,469 - -0.8 5,327,498 - -0.9
Or see this region's nucleotide sequence