Strain Fitness in Escherichia coli ECRC98 around JDDGAC_27730

Experiment: WM_Bas58

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntJDDGAC_27720 and JDDGAC_27725 are separated by 75 nucleotidesJDDGAC_27725 and JDDGAC_27730 are separated by 587 nucleotidesJDDGAC_27730 and JDDGAC_27735 are separated by 106 nucleotides JDDGAC_27720: JDDGAC_27720 - host-nuclease inhibitor protein Gam, at 5,323,750 to 5,324,046 _27720 JDDGAC_27725: JDDGAC_27725 - cell division inhibitor protein, at 5,324,122 to 5,324,328 _27725 JDDGAC_27730: JDDGAC_27730 - SIR2-like domain-containing protein, at 5,324,916 to 5,326,523 _27730 JDDGAC_27735: JDDGAC_27735 - HTH cro/C1-type domain-containing protein, at 5,326,630 to 5,327,115 _27735 Position (kb) 5324 5325 5326 5327Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5324.033 kb on + strandat 5324.033 kb on + strandat 5324.036 kb on + strandat 5324.102 kb on + strandat 5324.183 kb on + strand, within JDDGAC_27725at 5324.183 kb on + strand, within JDDGAC_27725at 5324.184 kb on - strand, within JDDGAC_27725at 5324.229 kb on + strand, within JDDGAC_27725at 5324.363 kb on + strandat 5324.365 kb on + strandat 5324.416 kb on + strandat 5324.417 kb on - strandat 5324.661 kb on + strandat 5324.662 kb on - strandat 5324.683 kb on + strandat 5325.565 kb on + strand, within JDDGAC_27730at 5325.581 kb on - strand, within JDDGAC_27730at 5325.645 kb on - strand, within JDDGAC_27730at 5325.717 kb on - strand, within JDDGAC_27730at 5325.858 kb on - strand, within JDDGAC_27730at 5326.531 kb on - strandat 5327.469 kb on - strandat 5327.498 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
remove
5,324,033 + -1.8
5,324,033 + +0.7
5,324,036 + -1.6
5,324,102 + -0.8
5,324,183 + JDDGAC_27725 0.29 -3.2
5,324,183 + JDDGAC_27725 0.29 -0.0
5,324,184 - JDDGAC_27725 0.30 -0.0
5,324,229 + JDDGAC_27725 0.52 -0.4
5,324,363 + -4.6
5,324,365 + +0.0
5,324,416 + -1.3
5,324,417 - -0.9
5,324,661 + -2.7
5,324,662 - -0.4
5,324,683 + -1.4
5,325,565 + JDDGAC_27730 0.40 -1.2
5,325,581 - JDDGAC_27730 0.41 -1.1
5,325,645 - JDDGAC_27730 0.45 -0.5
5,325,717 - JDDGAC_27730 0.50 -0.8
5,325,858 - JDDGAC_27730 0.59 -0.3
5,326,531 - +0.2
5,327,469 - -0.8
5,327,498 - -0.9

Or see this region's nucleotide sequence