Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt psuT and yeiL are separated by 70 nucleotides yeiL and rihB are separated by 129 nucleotides
JDDGAC_27420: psuT - Putative pseudouridine transporter, at 5,268,695 to 5,269,945
psuT
JDDGAC_27425: yeiL - Regulatory protein YeiL, at 5,270,016 to 5,270,714
yeiL
JDDGAC_27430: rihB - ribosylpyrimidine nucleosidase, at 5,270,844 to 5,271,785
rihB
Position (kb) 5270
5271 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5269.043 kb on + strand, within psuT at 5269.043 kb on + strand, within psuT at 5269.043 kb on + strand, within psuT at 5269.222 kb on + strand, within psuT at 5269.348 kb on + strand, within psuT at 5269.348 kb on + strand, within psuT at 5269.349 kb on - strand, within psuT at 5269.511 kb on - strand, within psuT at 5269.760 kb on - strand, within psuT at 5269.798 kb on + strand, within psuT at 5269.828 kb on + strand at 5270.594 kb on - strand, within yeiL at 5270.746 kb on + strand at 5270.895 kb on - strand at 5270.983 kb on + strand, within rihB at 5271.021 kb on - strand, within rihB at 5271.084 kb on - strand, within rihB at 5271.162 kb on + strand, within rihB at 5271.248 kb on + strand, within rihB at 5271.249 kb on - strand, within rihB at 5271.289 kb on + strand, within rihB at 5271.290 kb on - strand, within rihB at 5271.304 kb on - strand, within rihB at 5271.534 kb on + strand, within rihB at 5271.602 kb on + strand, within rihB at 5271.603 kb on - strand, within rihB at 5271.618 kb on + strand, within rihB at 5271.619 kb on - strand, within rihB
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 5,269,043 + psuT JDDGAC_27420 0.28 +0.8 5,269,043 + psuT JDDGAC_27420 0.28 +2.0 5,269,043 + psuT JDDGAC_27420 0.28 +1.1 5,269,222 + psuT JDDGAC_27420 0.42 -0.7 5,269,348 + psuT JDDGAC_27420 0.52 -2.9 5,269,348 + psuT JDDGAC_27420 0.52 -0.0 5,269,349 - psuT JDDGAC_27420 0.52 -1.1 5,269,511 - psuT JDDGAC_27420 0.65 -0.7 5,269,760 - psuT JDDGAC_27420 0.85 -0.2 5,269,798 + psuT JDDGAC_27420 0.88 -0.9 5,269,828 + -0.1 5,270,594 - yeiL JDDGAC_27425 0.83 -2.3 5,270,746 + +1.4 5,270,895 - -2.1 5,270,983 + rihB JDDGAC_27430 0.15 +1.1 5,271,021 - rihB JDDGAC_27430 0.19 -0.9 5,271,084 - rihB JDDGAC_27430 0.25 -0.9 5,271,162 + rihB JDDGAC_27430 0.34 -0.1 5,271,248 + rihB JDDGAC_27430 0.43 -0.3 5,271,249 - rihB JDDGAC_27430 0.43 -0.6 5,271,289 + rihB JDDGAC_27430 0.47 +1.5 5,271,290 - rihB JDDGAC_27430 0.47 -0.2 5,271,304 - rihB JDDGAC_27430 0.49 +1.4 5,271,534 + rihB JDDGAC_27430 0.73 -1.0 5,271,602 + rihB JDDGAC_27430 0.80 +0.1 5,271,603 - rihB JDDGAC_27430 0.81 +0.0 5,271,618 + rihB JDDGAC_27430 0.82 +1.1 5,271,619 - rihB JDDGAC_27430 0.82 -1.2
Or see this region's nucleotide sequence