Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt araJ and inaA are separated by 80 nucleotides inaA and yfaE are separated by 53 nucleotides yfaE and nrdB overlap by 1 nucleotides
JDDGAC_27055: araJ - MFS transporter, at 5,184,438 to 5,185,628
araJ
JDDGAC_27060: inaA - lipopolysaccharide kinase InaA, at 5,185,709 to 5,186,359
inaA
JDDGAC_27065: yfaE - ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE, at 5,186,413 to 5,186,667
yfaE
JDDGAC_27070: nrdB - ribonucleotide-diphosphate reductase subunit beta, at 5,186,667 to 5,187,797
nrdB
Position (kb) 5186
5187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5185.506 kb on - strand, within araJ at 5185.524 kb on + strand at 5185.524 kb on + strand at 5185.525 kb on - strand at 5185.544 kb on - strand at 5185.567 kb on - strand at 5185.668 kb on + strand at 5185.668 kb on + strand at 5185.780 kb on + strand, within inaA at 5185.780 kb on + strand, within inaA at 5185.792 kb on + strand, within inaA at 5185.842 kb on - strand, within inaA at 5185.845 kb on + strand, within inaA at 5185.846 kb on - strand, within inaA at 5185.846 kb on - strand, within inaA at 5185.846 kb on - strand, within inaA at 5185.878 kb on + strand, within inaA at 5185.928 kb on - strand, within inaA at 5185.928 kb on - strand, within inaA at 5186.027 kb on - strand, within inaA at 5186.073 kb on + strand, within inaA at 5186.171 kb on + strand, within inaA at 5186.171 kb on + strand, within inaA at 5186.172 kb on - strand, within inaA at 5186.183 kb on - strand, within inaA at 5186.183 kb on - strand, within inaA at 5186.186 kb on + strand, within inaA at 5186.186 kb on + strand, within inaA at 5186.187 kb on - strand, within inaA at 5186.187 kb on - strand, within inaA at 5186.187 kb on - strand, within inaA at 5186.187 kb on - strand, within inaA at 5186.343 kb on - strand at 5186.348 kb on + strand at 5186.348 kb on + strand at 5186.358 kb on - strand at 5186.375 kb on + strand at 5186.564 kb on + strand, within yfaE at 5186.564 kb on + strand, within yfaE
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 5,185,506 - araJ JDDGAC_27055 0.90 -1.1 5,185,524 + -3.1 5,185,524 + -0.5 5,185,525 - -0.7 5,185,544 - -0.6 5,185,567 - +0.2 5,185,668 + -0.4 5,185,668 + -1.1 5,185,780 + inaA JDDGAC_27060 0.11 +0.4 5,185,780 + inaA JDDGAC_27060 0.11 -1.8 5,185,792 + inaA JDDGAC_27060 0.13 +0.7 5,185,842 - inaA JDDGAC_27060 0.20 +1.8 5,185,845 + inaA JDDGAC_27060 0.21 -0.3 5,185,846 - inaA JDDGAC_27060 0.21 -2.0 5,185,846 - inaA JDDGAC_27060 0.21 -1.5 5,185,846 - inaA JDDGAC_27060 0.21 -1.0 5,185,878 + inaA JDDGAC_27060 0.26 -1.1 5,185,928 - inaA JDDGAC_27060 0.34 -1.2 5,185,928 - inaA JDDGAC_27060 0.34 +0.8 5,186,027 - inaA JDDGAC_27060 0.49 +1.4 5,186,073 + inaA JDDGAC_27060 0.56 -0.4 5,186,171 + inaA JDDGAC_27060 0.71 +0.0 5,186,171 + inaA JDDGAC_27060 0.71 +0.4 5,186,172 - inaA JDDGAC_27060 0.71 +1.8 5,186,183 - inaA JDDGAC_27060 0.73 -0.3 5,186,183 - inaA JDDGAC_27060 0.73 -0.9 5,186,186 + inaA JDDGAC_27060 0.73 +0.2 5,186,186 + inaA JDDGAC_27060 0.73 -0.9 5,186,187 - inaA JDDGAC_27060 0.73 -1.8 5,186,187 - inaA JDDGAC_27060 0.73 -0.0 5,186,187 - inaA JDDGAC_27060 0.73 +0.8 5,186,187 - inaA JDDGAC_27060 0.73 +0.3 5,186,343 - +2.2 5,186,348 + +0.5 5,186,348 + -0.3 5,186,358 - -3.2 5,186,375 + -2.2 5,186,564 + yfaE JDDGAC_27065 0.59 -1.6 5,186,564 + yfaE JDDGAC_27065 0.59 -2.3
Or see this region's nucleotide sequence