Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eutC and eutL are separated by 9 nucleotides eutL and eutK are separated by 12 nucleotides eutK and eutR are separated by 45 nucleotides
JDDGAC_26025: eutC - ethanolamine ammonia-lyase subunit beta, at 4,979,447 to 4,980,334
eutC
JDDGAC_26030: eutL - ethanolamine utilization microcompartment protein EutL, at 4,980,344 to 4,981,003
eutL
JDDGAC_26035: eutK - ethanolamine utilization microcompartment protein EutK, at 4,981,016 to 4,981,516
eutK
JDDGAC_26040: eutR - HTH-type transcriptional regulator EutR, at 4,981,562 to 4,982,614
eutR
Position (kb) 4981
4982 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4980.108 kb on + strand, within eutC at 4980.220 kb on + strand, within eutC at 4980.220 kb on + strand, within eutC at 4980.442 kb on + strand, within eutL at 4980.442 kb on + strand, within eutL at 4980.443 kb on - strand, within eutL at 4980.443 kb on - strand, within eutL at 4980.483 kb on + strand, within eutL at 4980.488 kb on + strand, within eutL at 4980.489 kb on - strand, within eutL at 4980.489 kb on - strand, within eutL at 4980.489 kb on - strand, within eutL at 4980.525 kb on + strand, within eutL at 4980.526 kb on - strand, within eutL at 4980.526 kb on - strand, within eutL at 4980.535 kb on - strand, within eutL at 4980.535 kb on - strand, within eutL at 4980.535 kb on - strand, within eutL at 4980.536 kb on + strand, within eutL at 4980.536 kb on + strand, within eutL at 4980.536 kb on + strand, within eutL at 4980.536 kb on + strand, within eutL at 4980.727 kb on - strand, within eutL at 4980.727 kb on - strand, within eutL at 4980.727 kb on - strand, within eutL at 4980.746 kb on + strand, within eutL at 4980.746 kb on + strand, within eutL at 4980.747 kb on - strand, within eutL at 4980.747 kb on - strand, within eutL at 4980.821 kb on + strand, within eutL at 4980.855 kb on + strand, within eutL at 4980.855 kb on + strand, within eutL at 4980.856 kb on - strand, within eutL at 4980.869 kb on + strand, within eutL at 4980.869 kb on + strand, within eutL at 4980.869 kb on + strand, within eutL at 4980.869 kb on + strand, within eutL at 4980.870 kb on - strand, within eutL at 4981.097 kb on - strand, within eutK at 4981.097 kb on - strand, within eutK at 4981.276 kb on + strand, within eutK at 4981.331 kb on - strand, within eutK at 4981.377 kb on + strand, within eutK at 4981.378 kb on - strand, within eutK at 4981.476 kb on + strand at 4981.481 kb on - strand at 4981.540 kb on + strand at 4981.555 kb on + strand at 4981.577 kb on - strand at 4981.598 kb on + strand at 4981.599 kb on - strand at 4981.599 kb on - strand at 4981.599 kb on - strand at 4981.683 kb on - strand, within eutR at 4981.683 kb on - strand, within eutR at 4981.721 kb on + strand, within eutR at 4981.722 kb on - strand, within eutR at 4981.722 kb on - strand, within eutR at 4981.799 kb on + strand, within eutR at 4981.800 kb on - strand, within eutR at 4981.800 kb on - strand, within eutR at 4981.954 kb on - strand, within eutR at 4981.954 kb on - strand, within eutR at 4982.033 kb on - strand, within eutR at 4982.049 kb on + strand, within eutR at 4982.049 kb on + strand, within eutR at 4982.049 kb on + strand, within eutR at 4982.049 kb on + strand, within eutR at 4982.049 kb on + strand, within eutR at 4982.050 kb on - strand, within eutR at 4982.050 kb on - strand, within eutR at 4982.050 kb on - strand, within eutR at 4982.050 kb on - strand, within eutR at 4982.053 kb on + strand, within eutR at 4982.053 kb on + strand, within eutR at 4982.053 kb on + strand, within eutR at 4982.053 kb on + strand, within eutR at 4982.053 kb on + strand, within eutR at 4982.053 kb on + strand, within eutR at 4982.053 kb on + strand, within eutR at 4982.054 kb on - strand, within eutR at 4982.054 kb on - strand, within eutR at 4982.054 kb on - strand, within eutR at 4982.063 kb on - strand, within eutR at 4982.095 kb on + strand, within eutR at 4982.096 kb on - strand, within eutR at 4982.195 kb on - strand, within eutR at 4982.203 kb on - strand, within eutR at 4982.273 kb on + strand, within eutR at 4982.303 kb on + strand, within eutR at 4982.304 kb on - strand, within eutR at 4982.350 kb on + strand, within eutR at 4982.379 kb on + strand, within eutR at 4982.399 kb on - strand, within eutR at 4982.494 kb on - strand, within eutR
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 4,980,108 + eutC JDDGAC_26025 0.74 -1.4 4,980,220 + eutC JDDGAC_26025 0.87 -1.2 4,980,220 + eutC JDDGAC_26025 0.87 -0.8 4,980,442 + eutL JDDGAC_26030 0.15 -1.0 4,980,442 + eutL JDDGAC_26030 0.15 +0.4 4,980,443 - eutL JDDGAC_26030 0.15 -1.6 4,980,443 - eutL JDDGAC_26030 0.15 -0.5 4,980,483 + eutL JDDGAC_26030 0.21 -0.9 4,980,488 + eutL JDDGAC_26030 0.22 -0.6 4,980,489 - eutL JDDGAC_26030 0.22 +0.4 4,980,489 - eutL JDDGAC_26030 0.22 +0.8 4,980,489 - eutL JDDGAC_26030 0.22 +0.6 4,980,525 + eutL JDDGAC_26030 0.27 -1.2 4,980,526 - eutL JDDGAC_26030 0.28 -0.9 4,980,526 - eutL JDDGAC_26030 0.28 +0.3 4,980,535 - eutL JDDGAC_26030 0.29 +0.1 4,980,535 - eutL JDDGAC_26030 0.29 -1.7 4,980,535 - eutL JDDGAC_26030 0.29 -0.8 4,980,536 + eutL JDDGAC_26030 0.29 +0.1 4,980,536 + eutL JDDGAC_26030 0.29 -0.3 4,980,536 + eutL JDDGAC_26030 0.29 -0.4 4,980,536 + eutL JDDGAC_26030 0.29 -1.5 4,980,727 - eutL JDDGAC_26030 0.58 +0.4 4,980,727 - eutL JDDGAC_26030 0.58 +1.2 4,980,727 - eutL JDDGAC_26030 0.58 -1.6 4,980,746 + eutL JDDGAC_26030 0.61 -0.8 4,980,746 + eutL JDDGAC_26030 0.61 -0.1 4,980,747 - eutL JDDGAC_26030 0.61 +0.3 4,980,747 - eutL JDDGAC_26030 0.61 -0.3 4,980,821 + eutL JDDGAC_26030 0.72 +0.5 4,980,855 + eutL JDDGAC_26030 0.77 -0.0 4,980,855 + eutL JDDGAC_26030 0.77 +1.8 4,980,856 - eutL JDDGAC_26030 0.78 -0.8 4,980,869 + eutL JDDGAC_26030 0.80 -2.7 4,980,869 + eutL JDDGAC_26030 0.80 -2.8 4,980,869 + eutL JDDGAC_26030 0.80 +1.6 4,980,869 + eutL JDDGAC_26030 0.80 +2.4 4,980,870 - eutL JDDGAC_26030 0.80 +0.8 4,981,097 - eutK JDDGAC_26035 0.16 +0.3 4,981,097 - eutK JDDGAC_26035 0.16 -2.2 4,981,276 + eutK JDDGAC_26035 0.52 -1.9 4,981,331 - eutK JDDGAC_26035 0.63 -1.0 4,981,377 + eutK JDDGAC_26035 0.72 -2.6 4,981,378 - eutK JDDGAC_26035 0.72 -3.1 4,981,476 + +0.4 4,981,481 - -1.9 4,981,540 + +1.8 4,981,555 + -1.2 4,981,577 - -0.4 4,981,598 + -0.5 4,981,599 - +0.4 4,981,599 - +0.6 4,981,599 - -0.8 4,981,683 - eutR JDDGAC_26040 0.11 +0.9 4,981,683 - eutR JDDGAC_26040 0.11 +1.0 4,981,721 + eutR JDDGAC_26040 0.15 +0.0 4,981,722 - eutR JDDGAC_26040 0.15 +1.6 4,981,722 - eutR JDDGAC_26040 0.15 -0.2 4,981,799 + eutR JDDGAC_26040 0.23 -0.7 4,981,800 - eutR JDDGAC_26040 0.23 +1.0 4,981,800 - eutR JDDGAC_26040 0.23 -0.3 4,981,954 - eutR JDDGAC_26040 0.37 -0.5 4,981,954 - eutR JDDGAC_26040 0.37 +0.7 4,982,033 - eutR JDDGAC_26040 0.45 -0.2 4,982,049 + eutR JDDGAC_26040 0.46 +0.4 4,982,049 + eutR JDDGAC_26040 0.46 +0.8 4,982,049 + eutR JDDGAC_26040 0.46 -0.5 4,982,049 + eutR JDDGAC_26040 0.46 -2.2 4,982,049 + eutR JDDGAC_26040 0.46 -0.6 4,982,050 - eutR JDDGAC_26040 0.46 +0.2 4,982,050 - eutR JDDGAC_26040 0.46 -1.2 4,982,050 - eutR JDDGAC_26040 0.46 +0.8 4,982,050 - eutR JDDGAC_26040 0.46 -1.5 4,982,053 + eutR JDDGAC_26040 0.47 -0.7 4,982,053 + eutR JDDGAC_26040 0.47 +0.5 4,982,053 + eutR JDDGAC_26040 0.47 +1.1 4,982,053 + eutR JDDGAC_26040 0.47 -0.2 4,982,053 + eutR JDDGAC_26040 0.47 -0.8 4,982,053 + eutR JDDGAC_26040 0.47 -0.9 4,982,053 + eutR JDDGAC_26040 0.47 +0.4 4,982,054 - eutR JDDGAC_26040 0.47 -1.0 4,982,054 - eutR JDDGAC_26040 0.47 +1.4 4,982,054 - eutR JDDGAC_26040 0.47 +0.5 4,982,063 - eutR JDDGAC_26040 0.48 -1.6 4,982,095 + eutR JDDGAC_26040 0.51 -2.5 4,982,096 - eutR JDDGAC_26040 0.51 -1.3 4,982,195 - eutR JDDGAC_26040 0.60 -1.1 4,982,203 - eutR JDDGAC_26040 0.61 +0.4 4,982,273 + eutR JDDGAC_26040 0.68 -0.0 4,982,303 + eutR JDDGAC_26040 0.70 -1.5 4,982,304 - eutR JDDGAC_26040 0.70 -1.4 4,982,350 + eutR JDDGAC_26040 0.75 -0.9 4,982,379 + eutR JDDGAC_26040 0.78 +0.8 4,982,399 - eutR JDDGAC_26040 0.79 -1.2 4,982,494 - eutR JDDGAC_26040 0.89 +0.7
Or see this region's nucleotide sequence