Strain Fitness in Escherichia coli ECRC98 around JDDGAC_25925

Experiment: WM_Bas58

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas58
4,957,241	+	narQ	JDDGAC_25920	0.56	+1.0
4,957,241	+	narQ	JDDGAC_25920	0.56	+0.3
4,957,242	-	narQ	JDDGAC_25920	0.56	-0.1
4,957,242	-	narQ	JDDGAC_25920	0.56	+0.0
4,957,323	+	narQ	JDDGAC_25920	0.61	-1.2
4,957,324	-	narQ	JDDGAC_25920	0.61	+1.5
4,957,425	+	narQ	JDDGAC_25920	0.67	+0.8
4,957,425	+	narQ	JDDGAC_25920	0.67	-0.6
4,957,478	-	narQ	JDDGAC_25920	0.70	-0.7
4,957,577	-	narQ	JDDGAC_25920	0.76	-0.9
4,957,610	+	narQ	JDDGAC_25920	0.77	-0.4
4,957,610	+	narQ	JDDGAC_25920	0.77	-2.5
4,957,611	-	narQ	JDDGAC_25920	0.78	+0.4
4,957,611	-	narQ	JDDGAC_25920	0.78	+0.6
4,957,611	-	narQ	JDDGAC_25920	0.78	+0.5
4,957,615	-	narQ	JDDGAC_25920	0.78	-1.5
4,957,621	-	narQ	JDDGAC_25920	0.78	-1.9
4,957,632	-	narQ	JDDGAC_25920	0.79	-0.3
4,957,724	+	narQ	JDDGAC_25920	0.84	-0.6
4,957,724	+	narQ	JDDGAC_25920	0.84	-0.5
4,957,725	-	narQ	JDDGAC_25920	0.84	+2.5
4,957,745	-	narQ	JDDGAC_25920	0.85	-0.1
4,957,842	+				-0.6
4,957,901	-				+0.7
4,958,050	+				+1.0
4,958,050	+				+0.3
4,958,081	+				+0.2
4,958,092	-				-2.1
4,958,092	-				+1.7
4,958,100	-				-1.6
4,958,145	+				-0.7
4,958,210	-				-1.3
4,958,404	+	aegA	JDDGAC_25925	0.10	+0.4
4,958,497	+	aegA	JDDGAC_25925	0.15	+0.6
4,958,831	+	aegA	JDDGAC_25925	0.32	-0.3
4,958,881	+	aegA	JDDGAC_25925	0.34	-2.6
4,958,882	-	aegA	JDDGAC_25925	0.35	-2.5
4,958,932	+	aegA	JDDGAC_25925	0.37	+0.1
4,958,933	-	aegA	JDDGAC_25925	0.37	-0.2
4,958,934	+	aegA	JDDGAC_25925	0.37	+0.6
4,958,934	+	aegA	JDDGAC_25925	0.37	+1.0
4,958,934	+	aegA	JDDGAC_25925	0.37	-2.0
4,958,934	+	aegA	JDDGAC_25925	0.37	+0.6
4,958,935	-	aegA	JDDGAC_25925	0.37	-0.3
4,958,935	-	aegA	JDDGAC_25925	0.37	-0.6
4,958,935	-	aegA	JDDGAC_25925	0.37	+0.2
4,958,935	-	aegA	JDDGAC_25925	0.37	-1.0
4,959,064	+	aegA	JDDGAC_25925	0.44	-0.2
4,959,065	-	aegA	JDDGAC_25925	0.44	+0.2
4,959,065	-	aegA	JDDGAC_25925	0.44	+0.4
4,959,067	+	aegA	JDDGAC_25925	0.44	+0.1
4,959,068	-	aegA	JDDGAC_25925	0.44	-0.6
4,959,068	-	aegA	JDDGAC_25925	0.44	-0.5
4,959,156	+	aegA	JDDGAC_25925	0.48	-0.2
4,959,156	+	aegA	JDDGAC_25925	0.48	-1.9
4,959,157	-	aegA	JDDGAC_25925	0.48	+0.8
4,959,326	-	aegA	JDDGAC_25925	0.57	-0.4
4,959,401	-	aegA	JDDGAC_25925	0.61	-0.9
4,959,605	-	aegA	JDDGAC_25925	0.71	+0.9
4,959,615	+	aegA	JDDGAC_25925	0.72	-3.3
4,959,692	+	aegA	JDDGAC_25925	0.75	-0.5
4,959,709	+	aegA	JDDGAC_25925	0.76	+0.3
4,960,178	+				+0.2
4,960,210	+				+1.2
4,960,211	-				-0.4
4,960,214	-				-0.0
4,960,215	+				-0.3
4,960,215	+				-0.5
4,960,215	+				+1.3
4,960,216	-				-1.3
4,960,216	-				-0.0
4,960,244	+				-0.2
4,960,289	+				-0.2
4,960,313	+	nudK	JDDGAC_25930	0.12	-0.5
4,960,313	+	nudK	JDDGAC_25930	0.12	+0.2
4,960,313	+	nudK	JDDGAC_25930	0.12	+0.1
4,960,314	-	nudK	JDDGAC_25930	0.12	+1.2
4,960,314	-	nudK	JDDGAC_25930	0.12	-1.0
4,960,314	-	nudK	JDDGAC_25930	0.12	+0.6
4,960,314	-	nudK	JDDGAC_25930	0.12	-0.8
4,960,314	-	nudK	JDDGAC_25930	0.12	+1.2
4,960,347	-	nudK	JDDGAC_25930	0.18	+0.4
4,960,347	-	nudK	JDDGAC_25930	0.18	+0.4
4,960,452	-	nudK	JDDGAC_25930	0.36	+0.2
4,960,599	+	nudK	JDDGAC_25930	0.61	+0.9
4,960,599	+	nudK	JDDGAC_25930	0.61	-0.2
4,960,599	+	nudK	JDDGAC_25930	0.61	-1.5
4,960,599	+	nudK	JDDGAC_25930	0.61	+0.0
4,960,600	-	nudK	JDDGAC_25930	0.62	-0.3
4,960,601	+	nudK	JDDGAC_25930	0.62	-1.3
4,960,601	+	nudK	JDDGAC_25930	0.62	+0.2
4,960,602	-	nudK	JDDGAC_25930	0.62	-1.1
4,960,602	-	nudK	JDDGAC_25930	0.62	+1.0
4,960,650	+	nudK	JDDGAC_25930	0.70	+2.0
4,960,701	-	nudK	JDDGAC_25930	0.79	-1.1
4,960,701	-	nudK	JDDGAC_25930	0.79	-0.3
4,961,050	+				-0.5
4,961,092	+	ypfG	JDDGAC_25935	0.14	-1.1
4,961,092	+	ypfG	JDDGAC_25935	0.14	+1.3