Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt edcC and ecdD are separated by 10 nucleotides ecdD and pphB are separated by 40 nucleotides pphB and mutS are separated by 105 nucleotides
JDDGAC_24175: edcC - Phenolic acid decarboxylase, at 4,634,613 to 4,636,040
edcC
JDDGAC_24180: ecdD - Protein EcdD, at 4,636,051 to 4,636,287
ecdD
JDDGAC_24185: pphB - protein-serine/threonine phosphatase, at 4,636,328 to 4,636,984
pphB
JDDGAC_24190: mutS - DNA mismatch repair protein MutS, at 4,637,090 to 4,639,651
mutS
Position (kb) 4636
4637 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4635.131 kb on + strand, within edcC at 4635.132 kb on - strand, within edcC at 4635.526 kb on - strand, within edcC at 4635.588 kb on + strand, within edcC at 4635.640 kb on - strand, within edcC at 4635.663 kb on - strand, within edcC at 4635.663 kb on - strand, within edcC at 4635.745 kb on + strand, within edcC at 4635.745 kb on + strand, within edcC at 4635.758 kb on + strand, within edcC at 4635.758 kb on + strand, within edcC at 4635.759 kb on - strand, within edcC at 4635.759 kb on - strand, within edcC at 4635.857 kb on + strand, within edcC at 4635.858 kb on - strand, within edcC at 4636.019 kb on + strand at 4636.034 kb on + strand at 4636.034 kb on + strand at 4636.035 kb on - strand at 4636.035 kb on - strand at 4636.039 kb on - strand at 4636.124 kb on + strand, within ecdD at 4636.124 kb on + strand, within ecdD at 4636.124 kb on + strand, within ecdD at 4636.125 kb on - strand, within ecdD at 4636.125 kb on - strand, within ecdD at 4636.125 kb on - strand, within ecdD at 4636.126 kb on + strand, within ecdD at 4636.126 kb on + strand, within ecdD at 4636.147 kb on + strand, within ecdD at 4636.150 kb on - strand, within ecdD at 4636.150 kb on - strand, within ecdD at 4636.227 kb on + strand, within ecdD at 4636.278 kb on + strand at 4636.334 kb on + strand at 4636.423 kb on + strand, within pphB at 4636.424 kb on - strand, within pphB at 4636.584 kb on - strand, within pphB at 4636.709 kb on - strand, within pphB at 4636.847 kb on - strand, within pphB at 4636.937 kb on - strand at 4637.222 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 4,635,131 + edcC JDDGAC_24175 0.36 -0.4 4,635,132 - edcC JDDGAC_24175 0.36 -0.5 4,635,526 - edcC JDDGAC_24175 0.64 +0.6 4,635,588 + edcC JDDGAC_24175 0.68 -1.0 4,635,640 - edcC JDDGAC_24175 0.72 -0.7 4,635,663 - edcC JDDGAC_24175 0.74 +1.9 4,635,663 - edcC JDDGAC_24175 0.74 -1.2 4,635,745 + edcC JDDGAC_24175 0.79 +1.0 4,635,745 + edcC JDDGAC_24175 0.79 -0.9 4,635,758 + edcC JDDGAC_24175 0.80 +0.5 4,635,758 + edcC JDDGAC_24175 0.80 +0.4 4,635,759 - edcC JDDGAC_24175 0.80 -0.7 4,635,759 - edcC JDDGAC_24175 0.80 -0.3 4,635,857 + edcC JDDGAC_24175 0.87 +0.1 4,635,858 - edcC JDDGAC_24175 0.87 -0.5 4,636,019 + -0.2 4,636,034 + -0.2 4,636,034 + -0.7 4,636,035 - -0.6 4,636,035 - -0.2 4,636,039 - +0.5 4,636,124 + ecdD JDDGAC_24180 0.31 +0.1 4,636,124 + ecdD JDDGAC_24180 0.31 -0.9 4,636,124 + ecdD JDDGAC_24180 0.31 +0.2 4,636,125 - ecdD JDDGAC_24180 0.31 -1.1 4,636,125 - ecdD JDDGAC_24180 0.31 +0.7 4,636,125 - ecdD JDDGAC_24180 0.31 +1.5 4,636,126 + ecdD JDDGAC_24180 0.32 -2.5 4,636,126 + ecdD JDDGAC_24180 0.32 -3.0 4,636,147 + ecdD JDDGAC_24180 0.41 +0.3 4,636,150 - ecdD JDDGAC_24180 0.42 +0.8 4,636,150 - ecdD JDDGAC_24180 0.42 +0.7 4,636,227 + ecdD JDDGAC_24180 0.74 -1.3 4,636,278 + +0.0 4,636,334 + +1.2 4,636,423 + pphB JDDGAC_24185 0.14 -0.3 4,636,424 - pphB JDDGAC_24185 0.15 -0.1 4,636,584 - pphB JDDGAC_24185 0.39 -1.7 4,636,709 - pphB JDDGAC_24185 0.58 +1.7 4,636,847 - pphB JDDGAC_24185 0.79 -1.3 4,636,937 - -1.3 4,637,222 - -0.2
Or see this region's nucleotide sequence