Strain Fitness in Escherichia coli ECRC98 around JDDGAC_20470

Experiment: WM_Bas58

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas58
3,920,150	+	gntR	JDDGAC_20465	0.14	+1.1
3,920,151	-	gntR	JDDGAC_20465	0.15	+0.3
3,920,215	-	gntR	JDDGAC_20465	0.21	-0.6
3,920,248	-	gntR	JDDGAC_20465	0.24	+1.0
3,920,248	-	gntR	JDDGAC_20465	0.24	-0.2
3,920,248	-	gntR	JDDGAC_20465	0.24	-1.4
3,920,307	-	gntR	JDDGAC_20465	0.30	+0.1
3,920,312	+	gntR	JDDGAC_20465	0.31	+0.2
3,920,389	+	gntR	JDDGAC_20465	0.38	-0.7
3,920,390	-	gntR	JDDGAC_20465	0.39	+0.1
3,920,584	+	gntR	JDDGAC_20465	0.58	+0.2
3,920,584	+	gntR	JDDGAC_20465	0.58	-0.3
3,920,585	-	gntR	JDDGAC_20465	0.58	-0.1
3,920,585	-	gntR	JDDGAC_20465	0.58	+0.3
3,920,585	-	gntR	JDDGAC_20465	0.58	-0.1
3,920,587	+	gntR	JDDGAC_20465	0.58	-2.5
3,920,587	+	gntR	JDDGAC_20465	0.58	+0.6
3,920,587	+	gntR	JDDGAC_20465	0.58	+1.0
3,920,587	+	gntR	JDDGAC_20465	0.58	-2.1
3,920,643	-	gntR	JDDGAC_20465	0.64	+0.6
3,920,643	-	gntR	JDDGAC_20465	0.64	-1.2
3,920,644	+	gntR	JDDGAC_20465	0.64	-0.6
3,920,673	-	gntR	JDDGAC_20465	0.67	-3.2
3,920,740	+	gntR	JDDGAC_20465	0.74	-1.0
3,920,743	+	gntR	JDDGAC_20465	0.74	+2.1
3,920,743	+	gntR	JDDGAC_20465	0.74	-0.6
3,920,744	-	gntR	JDDGAC_20465	0.74	-0.4
3,920,962	-				-1.3
3,920,996	-				-0.3
3,920,996	-				-0.4
3,920,999	+				+0.0
3,920,999	+				-2.0
3,921,018	+				-0.8
3,921,029	+				-0.3
3,921,030	-				-2.5
3,921,031	+				+0.4
3,921,032	-				+0.7
3,921,032	-				+0.2
3,921,038	-				+0.5
3,921,064	+				-0.8
3,921,065	-				-3.1
3,921,122	+				+0.9
3,921,151	+				+0.8
3,921,170	+				-2.0
3,921,170	+				+1.0
3,921,170	+				+0.2
3,921,170	+				-1.1
3,921,170	+				+0.4
3,921,171	-				+0.3
3,921,171	-				+0.1
3,921,171	-				+1.2
3,921,379	+	gntK	JDDGAC_20470	0.45	-1.1
3,921,379	+	gntK	JDDGAC_20470	0.45	-1.0
3,921,380	-	gntK	JDDGAC_20470	0.45	-1.3
3,921,380	-	gntK	JDDGAC_20470	0.45	-0.1
3,921,591	+	gntK	JDDGAC_20470	0.85	-0.3
3,921,591	+	gntK	JDDGAC_20470	0.85	-1.1
3,921,665	+				+0.4
3,921,665	+				+0.4
3,921,666	-				-0.8
3,921,666	-				-0.5
3,921,669	+				-0.9
3,921,670	-				-1.1
3,921,676	+				-0.2
3,921,676	+				-0.4
3,921,676	+				+0.4
3,921,677	-				+1.1
3,921,677	-				-0.5
3,921,703	-				-0.2
3,921,745	+				+0.3
3,921,766	-				-0.4
3,921,766	-				+0.2
3,921,889	+	gntU	JDDGAC_20475	0.16	+0.2
3,921,889	+	gntU	JDDGAC_20475	0.16	+0.1
3,921,890	-	gntU	JDDGAC_20475	0.16	-1.6
3,921,890	-	gntU	JDDGAC_20475	0.16	-1.1
3,921,890	-	gntU	JDDGAC_20475	0.16	-0.8
3,921,906	+	gntU	JDDGAC_20475	0.18	+0.3
3,921,906	+	gntU	JDDGAC_20475	0.18	+1.3
3,921,906	+	gntU	JDDGAC_20475	0.18	+1.7
3,921,907	-	gntU	JDDGAC_20475	0.18	-1.6
3,921,949	+	gntU	JDDGAC_20475	0.21	-0.1
3,921,950	-	gntU	JDDGAC_20475	0.21	+0.2
3,921,950	-	gntU	JDDGAC_20475	0.21	-0.6
3,922,049	-	gntU	JDDGAC_20475	0.28	-0.3
3,922,280	+	gntU	JDDGAC_20475	0.45	+1.4
3,922,280	+	gntU	JDDGAC_20475	0.45	+1.7
3,922,281	-	gntU	JDDGAC_20475	0.45	+0.8
3,922,294	+	gntU	JDDGAC_20475	0.46	-0.5
3,922,295	-	gntU	JDDGAC_20475	0.47	-1.0
3,922,456	+	gntU	JDDGAC_20475	0.59	+0.0