Strain Fitness in Escherichia coli ECRC98 around JDDGAC_14590

Experiment: WM_Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsT and espX1 are separated by 469 nucleotidesespX1 and fimA are separated by 301 nucleotidesfimA and fimC are separated by 49 nucleotides JDDGAC_14585: rpsT - 30S ribosomal protein S20, at 2,720,501 to 2,720,764 rpsT JDDGAC_14590: espX1 - type III secretion system effector EspX1, at 2,721,234 to 2,722,655 espX1 JDDGAC_14595: fimA - fimbrial protein, at 2,722,957 to 2,723,490 fimA JDDGAC_14600: fimC - molecular chaperone, at 2,723,540 to 2,724,223 fimC Position (kb) 2721 2722 2723Strain fitness (log2 ratio) -3 -2 -1 0 1at 2720.378 kb on - strandat 2720.866 kb on + strandat 2720.954 kb on + strandat 2720.958 kb on + strandat 2720.958 kb on + strandat 2720.959 kb on - strandat 2721.737 kb on + strand, within espX1at 2721.741 kb on + strand, within espX1at 2722.449 kb on - strand, within espX1at 2723.049 kb on + strand, within fimAat 2723.050 kb on - strand, within fimAat 2723.520 kb on - strandat 2723.537 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
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2,720,378 - -3.0
2,720,866 + +1.4
2,720,954 + -0.1
2,720,958 + -1.7
2,720,958 + -0.2
2,720,959 - -2.0
2,721,737 + espX1 JDDGAC_14590 0.35 -1.8
2,721,741 + espX1 JDDGAC_14590 0.36 -2.2
2,722,449 - espX1 JDDGAC_14590 0.85 +0.3
2,723,049 + fimA JDDGAC_14595 0.17 +0.4
2,723,050 - fimA JDDGAC_14595 0.17 +0.4
2,723,520 - -2.5
2,723,537 + -0.1

Or see this region's nucleotide sequence