Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gcl and allR are separated by 89 nucleotides allR and allA are separated by 77 nucleotides allA and allS are separated by 229 nucleotides
JDDGAC_11570: gcl - glyoxylate carboligase, at 2,096,956 to 2,098,737
gcl
JDDGAC_11575: allR - HTH-type transcriptional repressor AllR, at 2,098,827 to 2,099,642
allR
JDDGAC_11580: allA - ureidoglycolate lyase, at 2,099,720 to 2,100,202
allA
JDDGAC_11585: allS - HTH-type transcriptional activator AllS, at 2,100,432 to 2,101,358
allS
Position (kb)
2099
2100
2101 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2098.829 kb on - strand at 2098.962 kb on - strand, within allR at 2098.965 kb on + strand, within allR at 2098.965 kb on + strand, within allR at 2098.966 kb on - strand, within allR at 2098.966 kb on - strand, within allR at 2098.966 kb on - strand, within allR at 2098.966 kb on - strand, within allR at 2098.966 kb on - strand, within allR at 2098.990 kb on - strand, within allR at 2099.004 kb on + strand, within allR at 2099.005 kb on - strand, within allR at 2099.021 kb on + strand, within allR at 2099.025 kb on + strand, within allR at 2099.031 kb on - strand, within allR at 2099.033 kb on - strand, within allR at 2099.090 kb on + strand, within allR at 2099.091 kb on - strand, within allR at 2099.238 kb on - strand, within allR at 2099.244 kb on + strand, within allR at 2099.244 kb on + strand, within allR at 2099.257 kb on - strand, within allR at 2099.260 kb on - strand, within allR at 2099.368 kb on + strand, within allR at 2099.369 kb on - strand, within allR at 2099.394 kb on + strand, within allR at 2099.394 kb on + strand, within allR at 2099.394 kb on + strand, within allR at 2099.508 kb on - strand, within allR at 2099.571 kb on + strand at 2099.643 kb on - strand at 2099.643 kb on - strand at 2099.643 kb on - strand at 2099.646 kb on + strand at 2099.646 kb on + strand at 2099.646 kb on + strand at 2099.646 kb on + strand at 2099.647 kb on - strand at 2099.651 kb on + strand at 2099.652 kb on - strand at 2099.662 kb on + strand at 2099.674 kb on + strand at 2099.694 kb on + strand at 2099.699 kb on + strand at 2099.749 kb on + strand at 2099.750 kb on - strand at 2099.843 kb on - strand, within allA at 2099.919 kb on - strand, within allA at 2100.112 kb on + strand, within allA at 2100.112 kb on + strand, within allA at 2100.179 kb on + strand at 2100.180 kb on - strand at 2100.217 kb on - strand at 2100.217 kb on - strand at 2100.217 kb on - strand at 2100.221 kb on + strand at 2100.284 kb on - strand at 2100.508 kb on + strand at 2100.512 kb on + strand at 2100.513 kb on - strand at 2100.534 kb on + strand, within allS at 2100.543 kb on - strand, within allS at 2100.625 kb on + strand, within allS at 2100.626 kb on - strand, within allS at 2100.626 kb on - strand, within allS at 2100.716 kb on + strand, within allS at 2100.717 kb on - strand, within allS at 2100.717 kb on - strand, within allS at 2100.717 kb on - strand, within allS at 2100.738 kb on + strand, within allS at 2100.739 kb on - strand, within allS at 2100.822 kb on + strand, within allS at 2100.823 kb on - strand, within allS at 2100.823 kb on - strand, within allS at 2100.849 kb on + strand, within allS at 2100.850 kb on - strand, within allS at 2100.902 kb on + strand, within allS at 2101.026 kb on - strand, within allS at 2101.048 kb on + strand, within allS at 2101.091 kb on + strand, within allS at 2101.091 kb on + strand, within allS
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 2,098,829 - +0.0 2,098,962 - allR JDDGAC_11575 0.17 +0.6 2,098,965 + allR JDDGAC_11575 0.17 +0.6 2,098,965 + allR JDDGAC_11575 0.17 -1.2 2,098,966 - allR JDDGAC_11575 0.17 +0.1 2,098,966 - allR JDDGAC_11575 0.17 -0.7 2,098,966 - allR JDDGAC_11575 0.17 -0.1 2,098,966 - allR JDDGAC_11575 0.17 +0.7 2,098,966 - allR JDDGAC_11575 0.17 -0.1 2,098,990 - allR JDDGAC_11575 0.20 +1.6 2,099,004 + allR JDDGAC_11575 0.22 +0.3 2,099,005 - allR JDDGAC_11575 0.22 +1.3 2,099,021 + allR JDDGAC_11575 0.24 +1.5 2,099,025 + allR JDDGAC_11575 0.24 -1.7 2,099,031 - allR JDDGAC_11575 0.25 +1.2 2,099,033 - allR JDDGAC_11575 0.25 +0.3 2,099,090 + allR JDDGAC_11575 0.32 +0.5 2,099,091 - allR JDDGAC_11575 0.32 -2.9 2,099,238 - allR JDDGAC_11575 0.50 -1.1 2,099,244 + allR JDDGAC_11575 0.51 -1.4 2,099,244 + allR JDDGAC_11575 0.51 +0.9 2,099,257 - allR JDDGAC_11575 0.53 -1.0 2,099,260 - allR JDDGAC_11575 0.53 +0.4 2,099,368 + allR JDDGAC_11575 0.66 -1.1 2,099,369 - allR JDDGAC_11575 0.66 +0.3 2,099,394 + allR JDDGAC_11575 0.69 +0.3 2,099,394 + allR JDDGAC_11575 0.69 -0.5 2,099,394 + allR JDDGAC_11575 0.69 +0.1 2,099,508 - allR JDDGAC_11575 0.83 -2.4 2,099,571 + +1.1 2,099,643 - +1.8 2,099,643 - -0.2 2,099,643 - +0.1 2,099,646 + +0.6 2,099,646 + +1.9 2,099,646 + -1.9 2,099,646 + -1.3 2,099,647 - +0.5 2,099,651 + -0.3 2,099,652 - +1.3 2,099,662 + -0.1 2,099,674 + -0.7 2,099,694 + -0.6 2,099,699 + +0.9 2,099,749 + +0.2 2,099,750 - -0.4 2,099,843 - allA JDDGAC_11580 0.25 -2.0 2,099,919 - allA JDDGAC_11580 0.41 -1.5 2,100,112 + allA JDDGAC_11580 0.81 +0.4 2,100,112 + allA JDDGAC_11580 0.81 -2.5 2,100,179 + +0.2 2,100,180 - -1.5 2,100,217 - +0.2 2,100,217 - -1.4 2,100,217 - +1.6 2,100,221 + +1.3 2,100,284 - +0.3 2,100,508 + -1.8 2,100,512 + -1.2 2,100,513 - -1.2 2,100,534 + allS JDDGAC_11585 0.11 +0.1 2,100,543 - allS JDDGAC_11585 0.12 -0.9 2,100,625 + allS JDDGAC_11585 0.21 -0.3 2,100,626 - allS JDDGAC_11585 0.21 -1.2 2,100,626 - allS JDDGAC_11585 0.21 -0.8 2,100,716 + allS JDDGAC_11585 0.31 +1.8 2,100,717 - allS JDDGAC_11585 0.31 -0.5 2,100,717 - allS JDDGAC_11585 0.31 -0.1 2,100,717 - allS JDDGAC_11585 0.31 +0.3 2,100,738 + allS JDDGAC_11585 0.33 +0.5 2,100,739 - allS JDDGAC_11585 0.33 -0.0 2,100,822 + allS JDDGAC_11585 0.42 -0.0 2,100,823 - allS JDDGAC_11585 0.42 +0.5 2,100,823 - allS JDDGAC_11585 0.42 +0.4 2,100,849 + allS JDDGAC_11585 0.45 -0.9 2,100,850 - allS JDDGAC_11585 0.45 +0.3 2,100,902 + allS JDDGAC_11585 0.51 +0.8 2,101,026 - allS JDDGAC_11585 0.64 +0.3 2,101,048 + allS JDDGAC_11585 0.66 +1.5 2,101,091 + allS JDDGAC_11585 0.71 -0.2 2,101,091 + allS JDDGAC_11585 0.71 -1.1
Or see this region's nucleotide sequence