Strain Fitness in Escherichia coli ECRC98 around JDDGAC_11580

Experiment: WM_Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgcl and allR are separated by 89 nucleotidesallR and allA are separated by 77 nucleotidesallA and allS are separated by 229 nucleotides JDDGAC_11570: gcl - glyoxylate carboligase, at 2,096,956 to 2,098,737 gcl JDDGAC_11575: allR - HTH-type transcriptional repressor AllR, at 2,098,827 to 2,099,642 allR JDDGAC_11580: allA - ureidoglycolate lyase, at 2,099,720 to 2,100,202 allA JDDGAC_11585: allS - HTH-type transcriptional activator AllS, at 2,100,432 to 2,101,358 allS Position (kb) 2099 2100 2101Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2098.829 kb on - strandat 2098.962 kb on - strand, within allRat 2098.965 kb on + strand, within allRat 2098.965 kb on + strand, within allRat 2098.966 kb on - strand, within allRat 2098.966 kb on - strand, within allRat 2098.966 kb on - strand, within allRat 2098.966 kb on - strand, within allRat 2098.966 kb on - strand, within allRat 2098.990 kb on - strand, within allRat 2099.004 kb on + strand, within allRat 2099.005 kb on - strand, within allRat 2099.021 kb on + strand, within allRat 2099.025 kb on + strand, within allRat 2099.031 kb on - strand, within allRat 2099.033 kb on - strand, within allRat 2099.090 kb on + strand, within allRat 2099.091 kb on - strand, within allRat 2099.238 kb on - strand, within allRat 2099.244 kb on + strand, within allRat 2099.244 kb on + strand, within allRat 2099.257 kb on - strand, within allRat 2099.260 kb on - strand, within allRat 2099.368 kb on + strand, within allRat 2099.369 kb on - strand, within allRat 2099.394 kb on + strand, within allRat 2099.394 kb on + strand, within allRat 2099.394 kb on + strand, within allRat 2099.508 kb on - strand, within allRat 2099.571 kb on + strandat 2099.643 kb on - strandat 2099.643 kb on - strandat 2099.643 kb on - strandat 2099.646 kb on + strandat 2099.646 kb on + strandat 2099.646 kb on + strandat 2099.646 kb on + strandat 2099.647 kb on - strandat 2099.651 kb on + strandat 2099.652 kb on - strandat 2099.662 kb on + strandat 2099.674 kb on + strandat 2099.694 kb on + strandat 2099.699 kb on + strandat 2099.749 kb on + strandat 2099.750 kb on - strandat 2099.843 kb on - strand, within allAat 2099.919 kb on - strand, within allAat 2100.112 kb on + strand, within allAat 2100.112 kb on + strand, within allAat 2100.179 kb on + strandat 2100.180 kb on - strandat 2100.217 kb on - strandat 2100.217 kb on - strandat 2100.217 kb on - strandat 2100.221 kb on + strandat 2100.284 kb on - strandat 2100.508 kb on + strandat 2100.512 kb on + strandat 2100.513 kb on - strandat 2100.534 kb on + strand, within allSat 2100.543 kb on - strand, within allSat 2100.625 kb on + strand, within allSat 2100.626 kb on - strand, within allSat 2100.626 kb on - strand, within allSat 2100.716 kb on + strand, within allSat 2100.717 kb on - strand, within allSat 2100.717 kb on - strand, within allSat 2100.717 kb on - strand, within allSat 2100.738 kb on + strand, within allSat 2100.739 kb on - strand, within allSat 2100.822 kb on + strand, within allSat 2100.823 kb on - strand, within allSat 2100.823 kb on - strand, within allSat 2100.849 kb on + strand, within allSat 2100.850 kb on - strand, within allSat 2100.902 kb on + strand, within allSat 2101.026 kb on - strand, within allSat 2101.048 kb on + strand, within allSat 2101.091 kb on + strand, within allSat 2101.091 kb on + strand, within allS

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
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2,098,829 - +0.0
2,098,962 - allR JDDGAC_11575 0.17 +0.6
2,098,965 + allR JDDGAC_11575 0.17 +0.6
2,098,965 + allR JDDGAC_11575 0.17 -1.2
2,098,966 - allR JDDGAC_11575 0.17 +0.1
2,098,966 - allR JDDGAC_11575 0.17 -0.7
2,098,966 - allR JDDGAC_11575 0.17 -0.1
2,098,966 - allR JDDGAC_11575 0.17 +0.7
2,098,966 - allR JDDGAC_11575 0.17 -0.1
2,098,990 - allR JDDGAC_11575 0.20 +1.6
2,099,004 + allR JDDGAC_11575 0.22 +0.3
2,099,005 - allR JDDGAC_11575 0.22 +1.3
2,099,021 + allR JDDGAC_11575 0.24 +1.5
2,099,025 + allR JDDGAC_11575 0.24 -1.7
2,099,031 - allR JDDGAC_11575 0.25 +1.2
2,099,033 - allR JDDGAC_11575 0.25 +0.3
2,099,090 + allR JDDGAC_11575 0.32 +0.5
2,099,091 - allR JDDGAC_11575 0.32 -2.9
2,099,238 - allR JDDGAC_11575 0.50 -1.1
2,099,244 + allR JDDGAC_11575 0.51 -1.4
2,099,244 + allR JDDGAC_11575 0.51 +0.9
2,099,257 - allR JDDGAC_11575 0.53 -1.0
2,099,260 - allR JDDGAC_11575 0.53 +0.4
2,099,368 + allR JDDGAC_11575 0.66 -1.1
2,099,369 - allR JDDGAC_11575 0.66 +0.3
2,099,394 + allR JDDGAC_11575 0.69 +0.3
2,099,394 + allR JDDGAC_11575 0.69 -0.5
2,099,394 + allR JDDGAC_11575 0.69 +0.1
2,099,508 - allR JDDGAC_11575 0.83 -2.4
2,099,571 + +1.1
2,099,643 - +1.8
2,099,643 - -0.2
2,099,643 - +0.1
2,099,646 + +0.6
2,099,646 + +1.9
2,099,646 + -1.9
2,099,646 + -1.3
2,099,647 - +0.5
2,099,651 + -0.3
2,099,652 - +1.3
2,099,662 + -0.1
2,099,674 + -0.7
2,099,694 + -0.6
2,099,699 + +0.9
2,099,749 + +0.2
2,099,750 - -0.4
2,099,843 - allA JDDGAC_11580 0.25 -2.0
2,099,919 - allA JDDGAC_11580 0.41 -1.5
2,100,112 + allA JDDGAC_11580 0.81 +0.4
2,100,112 + allA JDDGAC_11580 0.81 -2.5
2,100,179 + +0.2
2,100,180 - -1.5
2,100,217 - +0.2
2,100,217 - -1.4
2,100,217 - +1.6
2,100,221 + +1.3
2,100,284 - +0.3
2,100,508 + -1.8
2,100,512 + -1.2
2,100,513 - -1.2
2,100,534 + allS JDDGAC_11585 0.11 +0.1
2,100,543 - allS JDDGAC_11585 0.12 -0.9
2,100,625 + allS JDDGAC_11585 0.21 -0.3
2,100,626 - allS JDDGAC_11585 0.21 -1.2
2,100,626 - allS JDDGAC_11585 0.21 -0.8
2,100,716 + allS JDDGAC_11585 0.31 +1.8
2,100,717 - allS JDDGAC_11585 0.31 -0.5
2,100,717 - allS JDDGAC_11585 0.31 -0.1
2,100,717 - allS JDDGAC_11585 0.31 +0.3
2,100,738 + allS JDDGAC_11585 0.33 +0.5
2,100,739 - allS JDDGAC_11585 0.33 -0.0
2,100,822 + allS JDDGAC_11585 0.42 -0.0
2,100,823 - allS JDDGAC_11585 0.42 +0.5
2,100,823 - allS JDDGAC_11585 0.42 +0.4
2,100,849 + allS JDDGAC_11585 0.45 -0.9
2,100,850 - allS JDDGAC_11585 0.45 +0.3
2,100,902 + allS JDDGAC_11585 0.51 +0.8
2,101,026 - allS JDDGAC_11585 0.64 +0.3
2,101,048 + allS JDDGAC_11585 0.66 +1.5
2,101,091 + allS JDDGAC_11585 0.71 -0.2
2,101,091 + allS JDDGAC_11585 0.71 -1.1

Or see this region's nucleotide sequence