Strain Fitness in Escherichia coli ECRC98 around JDDGAC_08430

Experiment: WM_Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthyaA and Ser_trna are separated by 425 nucleotidesSer_trna and JDDGAC_08430 are separated by 104 nucleotides JDDGAC_08420: hyaA - hydrogenase 1 small subunit, at 1,481,666 to 1,482,784 hyaA JDDGAC_08425: Ser_trna - tRNA-Ser(tga), at 1,483,210 to 1,483,297 _trna JDDGAC_08430: JDDGAC_08430 - hypothetical protein, at 1,483,402 to 1,483,584 _08430 Position (kb) 1483 1484Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1482.425 kb on + strand, within hyaAat 1482.425 kb on + strand, within hyaAat 1482.425 kb on + strand, within hyaAat 1482.438 kb on + strand, within hyaAat 1482.439 kb on - strand, within hyaAat 1482.439 kb on - strand, within hyaAat 1482.439 kb on - strand, within hyaAat 1482.451 kb on - strand, within hyaAat 1482.451 kb on - strand, within hyaAat 1482.451 kb on - strand, within hyaAat 1482.451 kb on - strand, within hyaAat 1482.684 kb on - strandat 1482.709 kb on + strandat 1482.831 kb on + strandat 1483.000 kb on - strandat 1483.006 kb on - strandat 1483.068 kb on - strandat 1483.121 kb on + strandat 1483.300 kb on + strandat 1483.361 kb on - strandat 1483.510 kb on + strand, within JDDGAC_08430at 1483.540 kb on + strand, within JDDGAC_08430at 1483.560 kb on + strand, within JDDGAC_08430at 1483.635 kb on + strandat 1483.650 kb on + strandat 1483.740 kb on + strandat 1483.741 kb on - strandat 1483.898 kb on - strandat 1483.943 kb on + strandat 1483.955 kb on + strandat 1483.956 kb on - strandat 1483.956 kb on - strandat 1483.957 kb on + strandat 1483.957 kb on + strandat 1484.060 kb on + strandat 1484.061 kb on - strandat 1484.085 kb on - strandat 1484.115 kb on + strandat 1484.116 kb on - strandat 1484.118 kb on - strandat 1484.168 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
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1,482,425 + hyaA JDDGAC_08420 0.68 -0.2
1,482,425 + hyaA JDDGAC_08420 0.68 -0.6
1,482,425 + hyaA JDDGAC_08420 0.68 -0.1
1,482,438 + hyaA JDDGAC_08420 0.69 -0.5
1,482,439 - hyaA JDDGAC_08420 0.69 +0.7
1,482,439 - hyaA JDDGAC_08420 0.69 -0.3
1,482,439 - hyaA JDDGAC_08420 0.69 +0.5
1,482,451 - hyaA JDDGAC_08420 0.70 -3.0
1,482,451 - hyaA JDDGAC_08420 0.70 +0.0
1,482,451 - hyaA JDDGAC_08420 0.70 -0.2
1,482,451 - hyaA JDDGAC_08420 0.70 -2.3
1,482,684 - -0.3
1,482,709 + +1.0
1,482,831 + -0.2
1,483,000 - +0.7
1,483,006 - +1.4
1,483,068 - +0.1
1,483,121 + -1.2
1,483,300 + +0.5
1,483,361 - +3.3
1,483,510 + JDDGAC_08430 0.59 -1.2
1,483,540 + JDDGAC_08430 0.75 -0.9
1,483,560 + JDDGAC_08430 0.86 -3.0
1,483,635 + -0.3
1,483,650 + +0.4
1,483,740 + +1.7
1,483,741 - +1.3
1,483,898 - +0.9
1,483,943 + +1.3
1,483,955 + -2.2
1,483,956 - +1.7
1,483,956 - +0.3
1,483,957 + +0.2
1,483,957 + +0.8
1,484,060 + +0.2
1,484,061 - +0.9
1,484,085 - -0.8
1,484,115 + -0.2
1,484,116 - +1.4
1,484,118 - +1.3
1,484,168 - -0.1

Or see this region's nucleotide sequence