Strain Fitness in Escherichia coli ECRC98 around JDDGAC_07660

Experiment: WM_Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_07650 and JDDGAC_07655 are separated by 453 nucleotidesJDDGAC_07655 and tnp-IS1 are separated by 128 nucleotidestnp-IS1 and yjiC are separated by 418 nucleotides JDDGAC_07650: JDDGAC_07650 - Membrane protein, at 1,325,032 to 1,325,490 _07650 JDDGAC_07655: JDDGAC_07655 - HTH-Tnp-IS1 domain-containing protein, at 1,325,944 to 1,326,003 _07655 JDDGAC_07660: tnp-IS1 - IS1 family transposase, at 1,326,132 to 1,326,425 tnp-IS1 JDDGAC_07665: yjiC - glucosyl transferase, at 1,326,844 to 1,327,968 yjiC Position (kb) 1326 1327Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1325.702 kb on + strandat 1326.013 kb on + strandat 1326.013 kb on + strandat 1326.212 kb on - strand, within tnp-IS1at 1326.237 kb on + strand, within tnp-IS1at 1326.269 kb on + strand, within tnp-IS1at 1326.282 kb on + strand, within tnp-IS1at 1326.807 kb on - strandat 1327.051 kb on - strand, within yjiCat 1327.099 kb on - strand, within yjiCat 1327.100 kb on + strand, within yjiCat 1327.100 kb on + strand, within yjiCat 1327.120 kb on - strand, within yjiCat 1327.174 kb on - strand, within yjiCat 1327.325 kb on - strand, within yjiCat 1327.402 kb on - strand, within yjiCat 1327.410 kb on + strand, within yjiC

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
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1,325,702 + +0.2
1,326,013 + -0.2
1,326,013 + -0.4
1,326,212 - tnp-IS1 JDDGAC_07660 0.27 +0.3
1,326,237 + tnp-IS1 JDDGAC_07660 0.36 -0.9
1,326,269 + tnp-IS1 JDDGAC_07660 0.47 -1.9
1,326,282 + tnp-IS1 JDDGAC_07660 0.51 -1.7
1,326,807 - +2.8
1,327,051 - yjiC JDDGAC_07665 0.18 -0.8
1,327,099 - yjiC JDDGAC_07665 0.23 +1.2
1,327,100 + yjiC JDDGAC_07665 0.23 +0.3
1,327,100 + yjiC JDDGAC_07665 0.23 -0.0
1,327,120 - yjiC JDDGAC_07665 0.25 +0.2
1,327,174 - yjiC JDDGAC_07665 0.29 -0.5
1,327,325 - yjiC JDDGAC_07665 0.43 +0.5
1,327,402 - yjiC JDDGAC_07665 0.50 -0.9
1,327,410 + yjiC JDDGAC_07665 0.50 -0.1

Or see this region's nucleotide sequence