Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06425

Experiment: WM_Bas58

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntJDDGAC_06415 and JDDGAC_06420 overlap by 4 nucleotidesJDDGAC_06420 and JDDGAC_06425 are separated by 5 nucleotidesJDDGAC_06425 and JDDGAC_06430 overlap by 1 nucleotidesJDDGAC_06430 and JDDGAC_06435 overlap by 4 nucleotides JDDGAC_06415: JDDGAC_06415 - tail assembly protein, at 1,123,840 to 1,124,412 _06415 JDDGAC_06420: JDDGAC_06420 - phage tail protein, at 1,124,409 to 1,125,152 _06420 JDDGAC_06425: JDDGAC_06425 - phage minor tail protein L, at 1,125,158 to 1,125,856 _06425 JDDGAC_06430: JDDGAC_06430 - phage tail protein, at 1,125,856 to 1,126,185 _06430 JDDGAC_06435: JDDGAC_06435 - phage tail tape measure protein, at 1,126,182 to 1,128,731 _06435 Position (kb) 1125 1126Strain fitness (log2 ratio) -2 -1 0 1at 1124.327 kb on - strand, within JDDGAC_06415at 1125.681 kb on + strand, within JDDGAC_06425at 1125.690 kb on + strand, within JDDGAC_06425at 1125.740 kb on - strand, within JDDGAC_06425at 1125.941 kb on - strand, within JDDGAC_06430at 1126.264 kb on + strandat 1126.621 kb on - strand, within JDDGAC_06435at 1126.623 kb on - strand, within JDDGAC_06435at 1126.653 kb on - strand, within JDDGAC_06435at 1126.653 kb on - strand, within JDDGAC_06435at 1126.790 kb on + strand, within JDDGAC_06435at 1126.791 kb on - strand, within JDDGAC_06435at 1126.791 kb on - strand, within JDDGAC_06435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
remove
1,124,327 - JDDGAC_06415 0.85 -0.3
1,125,681 + JDDGAC_06425 0.75 -0.9
1,125,690 + JDDGAC_06425 0.76 -2.1
1,125,740 - JDDGAC_06425 0.83 +0.1
1,125,941 - JDDGAC_06430 0.26 +0.3
1,126,264 + +0.6
1,126,621 - JDDGAC_06435 0.17 -1.5
1,126,623 - JDDGAC_06435 0.17 -0.3
1,126,653 - JDDGAC_06435 0.18 -0.3
1,126,653 - JDDGAC_06435 0.18 +1.4
1,126,790 + JDDGAC_06435 0.24 -0.7
1,126,791 - JDDGAC_06435 0.24 +0.0
1,126,791 - JDDGAC_06435 0.24 -0.4

Or see this region's nucleotide sequence