Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycjM and JDDGAC_04930 overlap by 1 nucleotides JDDGAC_04930 and pspE are separated by 209 nucleotides pspE and pspD are separated by 74 nucleotides pspD and pspC are separated by 8 nucleotides pspC and pspB overlap by 1 nucleotides pspB and pspA are separated by 53 nucleotides
JDDGAC_04925: ycjM - Glucosylglycerate phosphorylase, at 858,205 to 859,509
ycjM
JDDGAC_04930: JDDGAC_04930 - Alpha-amylase, at 859,509 to 859,883
_04930
JDDGAC_04935: pspE - thiosulfate sulfurtransferase PspE, at 860,093 to 860,407
pspE
JDDGAC_04940: pspD - phage shock protein PspD, at 860,482 to 860,703
pspD
JDDGAC_04945: pspC - envelope stress response membrane protein PspC, at 860,712 to 861,071
pspC
JDDGAC_04950: pspB - envelope stress response membrane protein PspB, at 861,071 to 861,295
pspB
JDDGAC_04955: pspA - phage shock protein PspA, at 861,349 to 862,017
pspA
Position (kb) 860
861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 859.185 kb on + strand, within ycjM at 860.022 kb on + strand at 860.022 kb on + strand at 860.155 kb on - strand, within pspE at 860.282 kb on - strand, within pspE at 860.314 kb on - strand, within pspE at 860.410 kb on - strand at 860.410 kb on - strand at 860.421 kb on + strand at 860.509 kb on - strand, within pspD at 860.703 kb on + strand at 860.761 kb on + strand, within pspC at 860.762 kb on - strand, within pspC at 860.762 kb on - strand, within pspC at 860.902 kb on + strand, within pspC at 860.902 kb on + strand, within pspC at 860.903 kb on - strand, within pspC at 860.903 kb on - strand, within pspC at 860.977 kb on - strand, within pspC at 860.987 kb on - strand, within pspC at 860.987 kb on - strand, within pspC at 861.295 kb on + strand at 861.300 kb on - strand at 861.351 kb on - strand at 861.351 kb on - strand at 861.380 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 859,185 + ycjM JDDGAC_04925 0.75 -1.3 860,022 + +2.4 860,022 + -0.0 860,155 - pspE JDDGAC_04935 0.20 -0.3 860,282 - pspE JDDGAC_04935 0.60 -2.1 860,314 - pspE JDDGAC_04935 0.70 -1.6 860,410 - -2.1 860,410 - +0.6 860,421 + +1.1 860,509 - pspD JDDGAC_04940 0.12 +1.1 860,703 + -0.4 860,761 + pspC JDDGAC_04945 0.14 -0.6 860,762 - pspC JDDGAC_04945 0.14 +0.3 860,762 - pspC JDDGAC_04945 0.14 +1.2 860,902 + pspC JDDGAC_04945 0.53 +0.4 860,902 + pspC JDDGAC_04945 0.53 +0.7 860,903 - pspC JDDGAC_04945 0.53 +0.8 860,903 - pspC JDDGAC_04945 0.53 +0.1 860,977 - pspC JDDGAC_04945 0.74 -1.1 860,987 - pspC JDDGAC_04945 0.76 -0.3 860,987 - pspC JDDGAC_04945 0.76 +0.1 861,295 + +0.9 861,300 - +0.0 861,351 - -0.8 861,351 - -3.3 861,380 - -0.9
Or see this region's nucleotide sequence