Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04680

Experiment: WM_Bas58

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntkil and JDDGAC_04675 overlap by 1 nucleotidesJDDGAC_04675 and racC are separated by 74 nucleotidesracC and recE are separated by 101 nucleotides JDDGAC_04670: kil - cell division protein FtsZ, at 810,738 to 810,959 kil JDDGAC_04675: JDDGAC_04675 - Rtr1/RPAP2 family, at 810,959 to 811,129 _04675 JDDGAC_04680: racC - Protein RacC, at 811,204 to 811,479 racC JDDGAC_04685: recE - exodeoxyribonuclease VIII, at 811,581 to 814,706 recE Position (kb) 811 812Strain fitness (log2 ratio) -2 -1 0 1at 810.823 kb on - strand, within kilat 811.234 kb on - strand, within racCat 811.969 kb on + strand, within recEat 812.069 kb on - strand, within recEat 812.457 kb on + strand, within recE

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
remove
810,823 - kil JDDGAC_04670 0.38 +1.3
811,234 - racC JDDGAC_04680 0.11 -0.9
811,969 + recE JDDGAC_04685 0.12 -2.6
812,069 - recE JDDGAC_04685 0.16 -1.2
812,457 + recE JDDGAC_04685 0.28 +0.1

Or see this region's nucleotide sequence