Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04295

Experiment: WM_Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntldhA and hslJ are separated by 110 nucleotideshslJ and ydbJ overlap by 4 nucleotidesydbJ and nifJ are separated by 273 nucleotides JDDGAC_04285: ldhA - D-lactate dehydrogenase, at 758,885 to 759,874 ldhA JDDGAC_04290: hslJ - heat shock protein HslJ, at 759,985 to 760,407 hslJ JDDGAC_04295: ydbJ - Uncharacterized protein YdbJ, at 760,404 to 760,670 ydbJ JDDGAC_04300: nifJ - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 760,944 to 764,468 nifJ Position (kb) 760 761Strain fitness (log2 ratio) -2 -1 0 1 2at 759.694 kb on + strand, within ldhAat 759.814 kb on + strandat 759.814 kb on + strandat 759.814 kb on + strandat 760.013 kb on + strandat 760.074 kb on - strand, within hslJat 760.376 kb on + strandat 760.619 kb on + strand, within ydbJat 760.714 kb on + strandat 760.715 kb on - strandat 760.872 kb on - strandat 760.933 kb on - strandat 760.943 kb on + strandat 760.944 kb on - strandat 761.013 kb on + strandat 761.018 kb on + strandat 761.649 kb on + strand, within nifJat 761.649 kb on + strand, within nifJ

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
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759,694 + ldhA JDDGAC_04285 0.82 +0.7
759,814 + +1.4
759,814 + -0.7
759,814 + +0.7
760,013 + +1.4
760,074 - hslJ JDDGAC_04290 0.21 -1.8
760,376 + +1.8
760,619 + ydbJ JDDGAC_04295 0.81 -1.2
760,714 + +0.3
760,715 - -1.0
760,872 - -1.6
760,933 - -0.6
760,943 + -1.6
760,944 - -0.3
761,013 + +0.4
761,018 + +0.9
761,649 + nifJ JDDGAC_04300 0.20 -2.0
761,649 + nifJ JDDGAC_04300 0.20 +0.8

Or see this region's nucleotide sequence