Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03180

Experiment: WM_Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteCs1768 and JDDGAC_03180 are separated by 31 nucleotidesJDDGAC_03180 and JDDGAC_03185 are separated by 34 nucleotidesJDDGAC_03185 and JDDGAC_03190 are separated by 15 nucleotides JDDGAC_03175: eCs1768 - DNA-binding protein, at 539,627 to 540,667 eCs1768 JDDGAC_03180: JDDGAC_03180 - replication protein, at 540,699 to 541,121 _03180 JDDGAC_03185: JDDGAC_03185 - DUF1627 domain-containing protein, at 541,156 to 541,926 _03185 JDDGAC_03190: JDDGAC_03190 - DUF977 domain-containing protein, at 541,942 to 542,334 _03190 Position (kb) 540 541 542Strain fitness (log2 ratio) -2 -1 0 1at 540.127 kb on + strand, within eCs1768at 540.889 kb on - strand, within JDDGAC_03180at 540.995 kb on + strand, within JDDGAC_03180at 540.995 kb on + strand, within JDDGAC_03180at 541.021 kb on + strand, within JDDGAC_03180at 542.044 kb on - strand, within JDDGAC_03190

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
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540,127 + eCs1768 JDDGAC_03175 0.48 -0.2
540,889 - JDDGAC_03180 0.45 +0.0
540,995 + JDDGAC_03180 0.70 -2.6
540,995 + JDDGAC_03180 0.70 +0.3
541,021 + JDDGAC_03180 0.76 +0.5
542,044 - JDDGAC_03190 0.26 +1.2

Or see this region's nucleotide sequence