Strain Fitness in Escherichia coli ECRC98 around JDDGAC_02170

Experiment: WM_Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydgJ and add are separated by 35 nucleotidesadd and malY are separated by 103 nucleotides JDDGAC_02165: ydgJ - Uncharacterized oxidoreductase YdgJ, at 386,614 to 387,654 ydgJ JDDGAC_02170: add - adenosine deaminase, at 387,690 to 388,691 add JDDGAC_02175: malY - bifunctional maltose regulon transcriptional repressor/cystathionine beta-lyase MalY, at 388,795 to 389,967 malY Position (kb) 387 388 389Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 386.826 kb on + strand, within ydgJat 386.838 kb on + strand, within ydgJat 387.052 kb on + strand, within ydgJat 387.176 kb on + strand, within ydgJat 387.203 kb on + strand, within ydgJat 387.218 kb on + strand, within ydgJat 387.327 kb on + strand, within ydgJat 387.327 kb on + strand, within ydgJat 387.352 kb on + strand, within ydgJat 387.361 kb on + strand, within ydgJat 387.446 kb on + strand, within ydgJat 387.446 kb on + strand, within ydgJat 387.517 kb on + strand, within ydgJat 387.542 kb on + strand, within ydgJat 387.542 kb on + strand, within ydgJat 387.819 kb on - strand, within addat 388.221 kb on + strand, within addat 388.412 kb on - strand, within addat 388.732 kb on + strandat 388.749 kb on - strandat 388.818 kb on + strandat 388.905 kb on + strandat 388.941 kb on + strand, within malYat 388.984 kb on + strand, within malYat 389.067 kb on - strand, within malYat 389.201 kb on + strand, within malYat 389.201 kb on + strand, within malYat 389.202 kb on - strand, within malYat 389.230 kb on - strand, within malYat 389.313 kb on + strand, within malYat 389.314 kb on - strand, within malYat 389.472 kb on + strand, within malYat 389.473 kb on - strand, within malYat 389.549 kb on - strand, within malYat 389.578 kb on - strand, within malYat 389.595 kb on - strand, within malYat 389.606 kb on + strand, within malYat 389.607 kb on - strand, within malYat 389.674 kb on - strand, within malYat 389.675 kb on + strand, within malYat 389.675 kb on + strand, within malYat 389.675 kb on + strand, within malYat 389.676 kb on - strand, within malYat 389.676 kb on - strand, within malYat 389.676 kb on - strand, within malYat 389.676 kb on - strand, within malYat 389.676 kb on - strand, within malY

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
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386,826 + ydgJ JDDGAC_02165 0.20 +0.2
386,838 + ydgJ JDDGAC_02165 0.22 +1.1
387,052 + ydgJ JDDGAC_02165 0.42 +1.0
387,176 + ydgJ JDDGAC_02165 0.54 +0.5
387,203 + ydgJ JDDGAC_02165 0.57 -0.5
387,218 + ydgJ JDDGAC_02165 0.58 +0.2
387,327 + ydgJ JDDGAC_02165 0.68 -0.5
387,327 + ydgJ JDDGAC_02165 0.68 -2.8
387,352 + ydgJ JDDGAC_02165 0.71 +1.4
387,361 + ydgJ JDDGAC_02165 0.72 -0.6
387,446 + ydgJ JDDGAC_02165 0.80 +1.2
387,446 + ydgJ JDDGAC_02165 0.80 +0.9
387,517 + ydgJ JDDGAC_02165 0.87 +1.8
387,542 + ydgJ JDDGAC_02165 0.89 -0.2
387,542 + ydgJ JDDGAC_02165 0.89 -0.5
387,819 - add JDDGAC_02170 0.13 -1.5
388,221 + add JDDGAC_02170 0.53 -0.5
388,412 - add JDDGAC_02170 0.72 -1.6
388,732 + -1.6
388,749 - +1.9
388,818 + -0.5
388,905 + -0.1
388,941 + malY JDDGAC_02175 0.12 +0.1
388,984 + malY JDDGAC_02175 0.16 +1.3
389,067 - malY JDDGAC_02175 0.23 +0.8
389,201 + malY JDDGAC_02175 0.35 -3.2
389,201 + malY JDDGAC_02175 0.35 +0.1
389,202 - malY JDDGAC_02175 0.35 -0.5
389,230 - malY JDDGAC_02175 0.37 +1.3
389,313 + malY JDDGAC_02175 0.44 +1.4
389,314 - malY JDDGAC_02175 0.44 -1.3
389,472 + malY JDDGAC_02175 0.58 +0.5
389,473 - malY JDDGAC_02175 0.58 -0.9
389,549 - malY JDDGAC_02175 0.64 -0.6
389,578 - malY JDDGAC_02175 0.67 -0.1
389,595 - malY JDDGAC_02175 0.68 +1.5
389,606 + malY JDDGAC_02175 0.69 +0.2
389,607 - malY JDDGAC_02175 0.69 -0.4
389,674 - malY JDDGAC_02175 0.75 +1.0
389,675 + malY JDDGAC_02175 0.75 -0.2
389,675 + malY JDDGAC_02175 0.75 +0.8
389,675 + malY JDDGAC_02175 0.75 -0.2
389,676 - malY JDDGAC_02175 0.75 +0.7
389,676 - malY JDDGAC_02175 0.75 -0.4
389,676 - malY JDDGAC_02175 0.75 -0.1
389,676 - malY JDDGAC_02175 0.75 +1.6
389,676 - malY JDDGAC_02175 0.75 +0.4

Or see this region's nucleotide sequence