Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kdgR and yobH are separated by 143 nucleotides yobH and yebO are separated by 377 nucleotides yebO and cspE are separated by 824 nucleotides
JDDGAC_01055: kdgR - DNA-binding transcriptional regulator KdgR, at 177,310 to 178,101
kdgR
JDDGAC_01060: yobH - Uncharacterized protein YobH, at 178,245 to 178,484
yobH
JDDGAC_01065: yebO - Uncharacterized protein YebO, at 178,862 to 179,149
yebO
JDDGAC_01070: cspE - transcription antiterminator/RNA stability regulator CspE, at 179,974 to 180,183
cspE
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1 at 177.904 kb on - strand, within kdgR at 178.023 kb on - strand at 178.030 kb on + strand at 178.030 kb on + strand at 178.030 kb on + strand at 178.031 kb on - strand at 178.149 kb on - strand at 178.149 kb on - strand at 178.200 kb on + strand at 178.201 kb on - strand at 178.237 kb on + strand at 178.317 kb on - strand, within yobH at 178.361 kb on - strand, within yobH at 178.361 kb on - strand, within yobH at 178.365 kb on - strand, within yobH at 178.378 kb on - strand, within yobH at 178.431 kb on + strand, within yobH at 178.578 kb on - strand at 178.619 kb on + strand at 178.624 kb on + strand at 178.624 kb on + strand at 178.624 kb on + strand at 178.831 kb on + strand at 178.912 kb on - strand, within yebO at 179.556 kb on + strand at 179.560 kb on + strand at 179.597 kb on - strand at 179.597 kb on - strand at 179.665 kb on + strand at 179.687 kb on + strand at 179.713 kb on + strand at 179.817 kb on + strand at 179.890 kb on + strand at 179.890 kb on + strand at 179.892 kb on + strand at 179.892 kb on + strand at 179.892 kb on + strand at 179.910 kb on + strand at 179.928 kb on + strand at 179.928 kb on + strand at 179.933 kb on + strand at 179.933 kb on + strand at 179.959 kb on + strand at 179.985 kb on + strand at 180.033 kb on + strand, within cspE at 180.065 kb on + strand, within cspE
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 177,904 - kdgR JDDGAC_01055 0.75 -1.8 178,023 - +0.8 178,030 + +0.5 178,030 + +0.2 178,030 + -1.4 178,031 - -1.5 178,149 - +0.7 178,149 - -0.2 178,200 + +1.2 178,201 - -1.1 178,237 + -0.0 178,317 - yobH JDDGAC_01060 0.30 -0.6 178,361 - yobH JDDGAC_01060 0.48 -1.7 178,361 - yobH JDDGAC_01060 0.48 -0.6 178,365 - yobH JDDGAC_01060 0.50 -0.3 178,378 - yobH JDDGAC_01060 0.55 +0.1 178,431 + yobH JDDGAC_01060 0.78 +0.2 178,578 - -2.2 178,619 + -1.8 178,624 + +1.2 178,624 + +0.9 178,624 + +0.5 178,831 + -0.4 178,912 - yebO JDDGAC_01065 0.17 -1.0 179,556 + -2.0 179,560 + +0.5 179,597 - -0.7 179,597 - -2.6 179,665 + -0.5 179,687 + +0.3 179,713 + +0.6 179,817 + +1.0 179,890 + +0.1 179,890 + +1.4 179,892 + +1.2 179,892 + +0.7 179,892 + +0.6 179,910 + +0.5 179,928 + +0.1 179,928 + +0.6 179,933 + +1.0 179,933 + +0.4 179,959 + +0.4 179,985 + -0.1 180,033 + cspE JDDGAC_01070 0.28 -0.5 180,065 + cspE JDDGAC_01070 0.43 -0.3
Or see this region's nucleotide sequence