Strain Fitness in Escherichia coli ECRC98 around JDDGAC_00770

Experiment: WM_Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargS and yecM are separated by 215 nucleotidesyecM and cutC are separated by 13 nucleotidescutC and torY are separated by 387 nucleotides JDDGAC_00760: argS - arginine--tRNA ligase, at 125,514 to 127,247 argS JDDGAC_00765: yecM - VOC family protein, at 127,463 to 128,029 yecM JDDGAC_00770: cutC - copper homeostasis protein CutC, at 128,043 to 128,789 cutC JDDGAC_00780: torY - Cytochrome c-type protein TorY, at 129,177 to 130,277 torY Position (kb) 128 129Strain fitness (log2 ratio) -2 -1 0 1 2at 127.318 kb on - strandat 127.428 kb on - strandat 127.462 kb on + strandat 127.523 kb on - strand, within yecMat 127.533 kb on + strand, within yecMat 127.533 kb on + strand, within yecMat 127.533 kb on + strand, within yecMat 127.533 kb on + strand, within yecMat 127.534 kb on - strand, within yecMat 127.565 kb on - strand, within yecMat 127.801 kb on + strand, within yecMat 127.802 kb on - strand, within yecMat 127.897 kb on + strand, within yecMat 127.897 kb on + strand, within yecMat 127.975 kb on + strandat 128.050 kb on + strandat 128.123 kb on - strand, within cutCat 128.348 kb on + strand, within cutCat 128.348 kb on + strand, within cutCat 128.535 kb on - strand, within cutCat 128.535 kb on - strand, within cutCat 128.715 kb on + strandat 128.724 kb on + strandat 128.818 kb on - strandat 128.932 kb on - strandat 128.942 kb on + strandat 129.671 kb on + strand, within torYat 129.770 kb on + strand, within torYat 129.771 kb on - strand, within torY

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
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127,318 - -0.0
127,428 - +2.1
127,462 + -0.6
127,523 - yecM JDDGAC_00765 0.11 -0.3
127,533 + yecM JDDGAC_00765 0.12 -0.2
127,533 + yecM JDDGAC_00765 0.12 -0.2
127,533 + yecM JDDGAC_00765 0.12 +0.7
127,533 + yecM JDDGAC_00765 0.12 +0.2
127,534 - yecM JDDGAC_00765 0.13 -0.3
127,565 - yecM JDDGAC_00765 0.18 -0.4
127,801 + yecM JDDGAC_00765 0.60 -0.3
127,802 - yecM JDDGAC_00765 0.60 +0.3
127,897 + yecM JDDGAC_00765 0.77 +2.3
127,897 + yecM JDDGAC_00765 0.77 -1.4
127,975 + +0.7
128,050 + +1.0
128,123 - cutC JDDGAC_00770 0.11 +0.0
128,348 + cutC JDDGAC_00770 0.41 -0.5
128,348 + cutC JDDGAC_00770 0.41 -2.0
128,535 - cutC JDDGAC_00770 0.66 +1.3
128,535 - cutC JDDGAC_00770 0.66 -1.4
128,715 + -0.3
128,724 + -1.0
128,818 - +1.4
128,932 - -0.2
128,942 + -0.0
129,671 + torY JDDGAC_00780 0.45 +1.0
129,770 + torY JDDGAC_00780 0.54 +1.3
129,771 - torY JDDGAC_00780 0.54 -0.0

Or see this region's nucleotide sequence