Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tcyL and yecC overlap by 4 nucleotides yecC and sdiA are separated by 229 nucleotides sdiA and yecF are separated by 67 nucleotides yecF and uvrC are separated by 458 nucleotides
JDDGAC_00390: tcyL - cystine ABC transporter permease, at 68,486 to 69,154
tcyL
JDDGAC_00395: yecC - L-cystine ABC transporter ATP-binding protein YecC, at 69,151 to 69,903
yecC
JDDGAC_00400: sdiA - transcriptional regulator SdiA, at 70,133 to 70,855
sdiA
JDDGAC_00405: yecF - DUF2594 domain-containing protein, at 70,923 to 71,147
yecF
JDDGAC_00410: uvrC - excinuclease ABC subunit UvrC, at 71,606 to 72,262
uvrC
Position (kb) 70
71 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 69.176 kb on + strand at 69.227 kb on + strand, within yecC at 69.227 kb on + strand, within yecC at 69.287 kb on + strand, within yecC at 69.287 kb on + strand, within yecC at 69.288 kb on - strand, within yecC at 69.368 kb on + strand, within yecC at 69.468 kb on + strand, within yecC at 69.843 kb on - strand at 69.843 kb on - strand at 69.901 kb on + strand at 69.905 kb on - strand at 70.050 kb on - strand at 70.071 kb on + strand at 70.072 kb on - strand at 70.089 kb on - strand at 70.129 kb on + strand at 70.263 kb on + strand, within sdiA at 70.263 kb on + strand, within sdiA at 70.263 kb on + strand, within sdiA at 70.297 kb on + strand, within sdiA at 70.341 kb on - strand, within sdiA at 70.343 kb on + strand, within sdiA at 70.396 kb on + strand, within sdiA at 70.410 kb on + strand, within sdiA at 70.410 kb on + strand, within sdiA at 70.410 kb on + strand, within sdiA at 70.428 kb on + strand, within sdiA at 70.500 kb on + strand, within sdiA at 70.500 kb on + strand, within sdiA at 70.635 kb on + strand, within sdiA at 70.647 kb on + strand, within sdiA at 70.798 kb on + strand at 70.811 kb on - strand at 70.830 kb on - strand at 70.906 kb on + strand at 70.907 kb on - strand at 70.920 kb on - strand at 70.933 kb on + strand at 71.149 kb on + strand at 71.208 kb on - strand at 71.208 kb on - strand at 71.210 kb on - strand at 71.210 kb on - strand at 71.269 kb on - strand at 71.272 kb on - strand at 71.284 kb on - strand at 71.286 kb on - strand at 71.286 kb on - strand at 71.344 kb on - strand at 71.349 kb on + strand at 71.350 kb on - strand at 71.350 kb on - strand at 71.555 kb on + strand at 71.555 kb on + strand at 71.556 kb on - strand at 71.569 kb on + strand at 71.599 kb on + strand at 71.619 kb on + strand at 71.676 kb on + strand, within uvrC at 71.760 kb on + strand, within uvrC at 71.773 kb on + strand, within uvrC at 71.848 kb on + strand, within uvrC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 69,176 + +0.1 69,227 + yecC JDDGAC_00395 0.10 -0.2 69,227 + yecC JDDGAC_00395 0.10 +0.1 69,287 + yecC JDDGAC_00395 0.18 +1.0 69,287 + yecC JDDGAC_00395 0.18 -0.1 69,288 - yecC JDDGAC_00395 0.18 +0.6 69,368 + yecC JDDGAC_00395 0.29 -1.4 69,468 + yecC JDDGAC_00395 0.42 -1.2 69,843 - -0.7 69,843 - +0.4 69,901 + +0.1 69,905 - +1.6 70,050 - -1.0 70,071 + +1.0 70,072 - -0.8 70,089 - -0.2 70,129 + -1.1 70,263 + sdiA JDDGAC_00400 0.18 -2.4 70,263 + sdiA JDDGAC_00400 0.18 -0.5 70,263 + sdiA JDDGAC_00400 0.18 +0.4 70,297 + sdiA JDDGAC_00400 0.23 -0.4 70,341 - sdiA JDDGAC_00400 0.29 -0.1 70,343 + sdiA JDDGAC_00400 0.29 -0.8 70,396 + sdiA JDDGAC_00400 0.36 -2.3 70,410 + sdiA JDDGAC_00400 0.38 -0.5 70,410 + sdiA JDDGAC_00400 0.38 -2.9 70,410 + sdiA JDDGAC_00400 0.38 +1.1 70,428 + sdiA JDDGAC_00400 0.41 -2.4 70,500 + sdiA JDDGAC_00400 0.51 -0.4 70,500 + sdiA JDDGAC_00400 0.51 -4.7 70,635 + sdiA JDDGAC_00400 0.69 -1.1 70,647 + sdiA JDDGAC_00400 0.71 +0.2 70,798 + -0.5 70,811 - -0.0 70,830 - +1.1 70,906 + -0.3 70,907 - -0.1 70,920 - +0.7 70,933 + -0.4 71,149 + -0.1 71,208 - -0.2 71,208 - -0.7 71,210 - +0.2 71,210 - +0.7 71,269 - +0.5 71,272 - -0.6 71,284 - +1.9 71,286 - +2.1 71,286 - -3.2 71,344 - +0.5 71,349 + +0.4 71,350 - +1.1 71,350 - -0.2 71,555 + -0.2 71,555 + -0.5 71,556 - +1.3 71,569 + +0.1 71,599 + -0.2 71,619 + +0.8 71,676 + uvrC JDDGAC_00410 0.11 +0.5 71,760 + uvrC JDDGAC_00410 0.23 +2.0 71,773 + uvrC JDDGAC_00410 0.25 -2.6 71,848 + uvrC JDDGAC_00410 0.37 -0.4
Or see this region's nucleotide sequence