Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliR and fliQ are separated by 7 nucleotides fliQ and fliP are separated by 9 nucleotides fliP and fliO overlap by 1 nucleotides fliO and fliN are separated by 2 nucleotides fliN and fliM overlap by 4 nucleotides
JDDGAC_00240: fliR - flagellar type III secretion system protein FliR, at 41,011 to 41,796
fliR
JDDGAC_00245: fliQ - flagellar biosynthesis protein FliQ, at 41,804 to 42,073
fliQ
JDDGAC_00250: fliP - flagellar type III secretion system pore protein FliP, at 42,083 to 42,820
fliP
JDDGAC_00255: fliO - flagellar type III secretion system protein FliO, at 42,820 to 43,185
fliO
JDDGAC_00260: fliN - flagellar motor switch protein FliN, at 43,188 to 43,601
fliN
JDDGAC_00265: fliM - flagellar motor switch protein FliM, at 43,598 to 44,602
fliM
Position (kb) 42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 41.365 kb on + strand, within fliR at 41.365 kb on + strand, within fliR at 41.434 kb on - strand, within fliR at 41.437 kb on - strand, within fliR at 41.623 kb on + strand, within fliR at 41.623 kb on + strand, within fliR at 41.624 kb on - strand, within fliR at 41.672 kb on - strand, within fliR at 41.759 kb on - strand at 41.796 kb on + strand at 41.797 kb on - strand at 41.815 kb on + strand at 41.817 kb on + strand at 41.818 kb on - strand at 41.847 kb on + strand, within fliQ at 41.848 kb on - strand, within fliQ at 41.885 kb on - strand, within fliQ at 41.897 kb on - strand, within fliQ at 41.900 kb on + strand, within fliQ at 41.974 kb on + strand, within fliQ at 42.084 kb on + strand at 42.140 kb on + strand at 42.300 kb on + strand, within fliP at 42.459 kb on - strand, within fliP at 42.521 kb on - strand, within fliP at 42.648 kb on - strand, within fliP at 42.810 kb on - strand at 42.840 kb on + strand at 43.180 kb on - strand at 43.224 kb on - strand at 43.224 kb on - strand at 43.249 kb on + strand, within fliN at 43.250 kb on - strand, within fliN at 43.287 kb on + strand, within fliN at 43.287 kb on + strand, within fliN at 43.424 kb on + strand, within fliN at 43.587 kb on - strand at 43.653 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 41,365 + fliR JDDGAC_00240 0.45 -0.2 41,365 + fliR JDDGAC_00240 0.45 +0.6 41,434 - fliR JDDGAC_00240 0.54 -0.2 41,437 - fliR JDDGAC_00240 0.54 -2.0 41,623 + fliR JDDGAC_00240 0.78 +1.2 41,623 + fliR JDDGAC_00240 0.78 +1.0 41,624 - fliR JDDGAC_00240 0.78 -0.5 41,672 - fliR JDDGAC_00240 0.84 +3.4 41,759 - +0.2 41,796 + -1.4 41,797 - -1.7 41,815 + +2.0 41,817 + +0.3 41,818 - -0.7 41,847 + fliQ JDDGAC_00245 0.16 -0.2 41,848 - fliQ JDDGAC_00245 0.16 +0.2 41,885 - fliQ JDDGAC_00245 0.30 +0.0 41,897 - fliQ JDDGAC_00245 0.34 +0.2 41,900 + fliQ JDDGAC_00245 0.36 +1.0 41,974 + fliQ JDDGAC_00245 0.63 +1.3 42,084 + +0.2 42,140 + +1.5 42,300 + fliP JDDGAC_00250 0.29 -0.9 42,459 - fliP JDDGAC_00250 0.51 -0.3 42,521 - fliP JDDGAC_00250 0.59 -1.6 42,648 - fliP JDDGAC_00250 0.77 -3.5 42,810 - +2.4 42,840 + -0.3 43,180 - +0.2 43,224 - +2.3 43,224 - +2.3 43,249 + fliN JDDGAC_00260 0.15 +0.8 43,250 - fliN JDDGAC_00260 0.15 +1.0 43,287 + fliN JDDGAC_00260 0.24 +0.1 43,287 + fliN JDDGAC_00260 0.24 +0.3 43,424 + fliN JDDGAC_00260 0.57 +0.7 43,587 - +2.3 43,653 - -2.5
Or see this region's nucleotide sequence