Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_28680 and JDDGAC_28685 overlap by 20 nucleotides JDDGAC_28685 and JDDGAC_28690 are separated by 77 nucleotides JDDGAC_28690 and JDDGAC_28695 are separated by 101 nucleotides JDDGAC_28695 and JDDGAC_28700 overlap by 4 nucleotides JDDGAC_28700 and JDDGAC_28705 are separated by 218 nucleotides JDDGAC_28705 and JDDGAC_28710 overlap by 4 nucleotides JDDGAC_28710 and JDDGAC_28715 are separated by 1 nucleotides
JDDGAC_28680: JDDGAC_28680 - Integrase, at 5,504,434 to 5,505,330
_28680
JDDGAC_28685: JDDGAC_28685 - AlpA family transcriptional regulator, at 5,505,311 to 5,505,502
_28685
JDDGAC_28690: JDDGAC_28690 - hypothetical protein, at 5,505,580 to 5,505,924
_28690
JDDGAC_28695: JDDGAC_28695 - hypothetical protein, at 5,506,026 to 5,506,115
_28695
JDDGAC_28700: JDDGAC_28700 - DUF551 domain-containing protein, at 5,506,112 to 5,506,462
_28700
JDDGAC_28705: JDDGAC_28705 - DUF551 domain-containing protein, at 5,506,681 to 5,506,815
_28705
JDDGAC_28710: JDDGAC_28710 - Ead/Ea22-like protein, at 5,506,812 to 5,507,327
_28710
JDDGAC_28715: JDDGAC_28715 - Ead/Ea22-like protein, at 5,507,329 to 5,508,276
_28715
Position (kb) 5506
5507 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5505.116 kb on + strand, within JDDGAC_28680 at 5505.239 kb on - strand, within JDDGAC_28680 at 5505.239 kb on - strand, within JDDGAC_28680 at 5505.278 kb on - strand at 5505.278 kb on - strand at 5505.421 kb on + strand, within JDDGAC_28685 at 5505.423 kb on + strand, within JDDGAC_28685 at 5505.536 kb on - strand at 5505.544 kb on + strand at 5505.592 kb on + strand at 5505.611 kb on + strand at 5505.638 kb on - strand, within JDDGAC_28690 at 5505.819 kb on - strand, within JDDGAC_28690 at 5505.823 kb on - strand, within JDDGAC_28690 at 5505.998 kb on + strand at 5505.998 kb on + strand at 5506.072 kb on - strand, within JDDGAC_28695 at 5506.143 kb on + strand at 5506.202 kb on - strand, within JDDGAC_28700 at 5506.223 kb on + strand, within JDDGAC_28700 at 5506.224 kb on - strand, within JDDGAC_28700
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 5,505,116 + JDDGAC_28680 0.76 -0.6 5,505,239 - JDDGAC_28680 0.90 -0.6 5,505,239 - JDDGAC_28680 0.90 +0.7 5,505,278 - +2.0 5,505,278 - +0.7 5,505,421 + JDDGAC_28685 0.57 +0.1 5,505,423 + JDDGAC_28685 0.58 +1.8 5,505,536 - +0.8 5,505,544 + +0.6 5,505,592 + -1.6 5,505,611 + +0.2 5,505,638 - JDDGAC_28690 0.17 +2.1 5,505,819 - JDDGAC_28690 0.69 +0.8 5,505,823 - JDDGAC_28690 0.70 -1.6 5,505,998 + -0.9 5,505,998 + -2.4 5,506,072 - JDDGAC_28695 0.51 +0.9 5,506,143 + +1.2 5,506,202 - JDDGAC_28700 0.26 -0.8 5,506,223 + JDDGAC_28700 0.32 -1.2 5,506,224 - JDDGAC_28700 0.32 -0.4
Or see this region's nucleotide sequence