Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_27700 and JDDGAC_27705 overlap by 28 nucleotides JDDGAC_27705 and exoD overlap by 1 nucleotides exoD and bet overlap by 4 nucleotides bet and JDDGAC_27720 are separated by 5 nucleotides JDDGAC_27720 and JDDGAC_27725 are separated by 75 nucleotides
JDDGAC_27700: JDDGAC_27700 - DUF1382 domain-containing protein, at 5,321,939 to 5,322,130
_27700
JDDGAC_27705: JDDGAC_27705 - cruciferin, at 5,322,103 to 5,322,285
_27705
JDDGAC_27710: exoD - Putative uncharacterized protein ExoD, at 5,322,285 to 5,322,962
exoD
JDDGAC_27715: bet - phage recombination protein Bet, at 5,322,959 to 5,323,744
bet
JDDGAC_27720: JDDGAC_27720 - host-nuclease inhibitor protein Gam, at 5,323,750 to 5,324,046
_27720
JDDGAC_27725: JDDGAC_27725 - cell division inhibitor protein, at 5,324,122 to 5,324,328
_27725
Position (kb) 5322
5323
5324 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5322.130 kb on + strand at 5322.147 kb on + strand, within JDDGAC_27705 at 5322.148 kb on - strand, within JDDGAC_27705 at 5322.286 kb on + strand at 5322.304 kb on - strand at 5322.304 kb on - strand at 5322.304 kb on - strand at 5322.407 kb on - strand, within exoD at 5322.452 kb on - strand, within exoD at 5322.843 kb on + strand, within exoD at 5322.844 kb on - strand, within exoD at 5322.844 kb on - strand, within exoD at 5323.195 kb on - strand, within bet at 5323.236 kb on + strand, within bet at 5323.293 kb on - strand, within bet at 5323.293 kb on - strand, within bet at 5324.033 kb on + strand at 5324.033 kb on + strand at 5324.036 kb on + strand at 5324.102 kb on + strand at 5324.183 kb on + strand, within JDDGAC_27725 at 5324.183 kb on + strand, within JDDGAC_27725 at 5324.184 kb on - strand, within JDDGAC_27725 at 5324.229 kb on + strand, within JDDGAC_27725 at 5324.363 kb on + strand at 5324.365 kb on + strand at 5324.416 kb on + strand at 5324.417 kb on - strand at 5324.661 kb on + strand at 5324.662 kb on - strand at 5324.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 5,322,130 + -0.7 5,322,147 + JDDGAC_27705 0.24 -1.6 5,322,148 - JDDGAC_27705 0.25 +1.4 5,322,286 + -1.8 5,322,304 - -4.1 5,322,304 - +0.7 5,322,304 - -0.8 5,322,407 - exoD JDDGAC_27710 0.18 -0.7 5,322,452 - exoD JDDGAC_27710 0.25 +1.5 5,322,843 + exoD JDDGAC_27710 0.82 +2.7 5,322,844 - exoD JDDGAC_27710 0.82 +1.1 5,322,844 - exoD JDDGAC_27710 0.82 -0.5 5,323,195 - bet JDDGAC_27715 0.30 +1.4 5,323,236 + bet JDDGAC_27715 0.35 -2.1 5,323,293 - bet JDDGAC_27715 0.42 -0.7 5,323,293 - bet JDDGAC_27715 0.42 -2.2 5,324,033 + -0.2 5,324,033 + +1.8 5,324,036 + +0.6 5,324,102 + -2.4 5,324,183 + JDDGAC_27725 0.29 +0.2 5,324,183 + JDDGAC_27725 0.29 -1.6 5,324,184 - JDDGAC_27725 0.30 +0.6 5,324,229 + JDDGAC_27725 0.52 +1.0 5,324,363 + -0.6 5,324,365 + +1.0 5,324,416 + +0.5 5,324,417 - +0.1 5,324,661 + -0.3 5,324,662 - +0.9 5,324,683 + -0.2
Or see this region's nucleotide sequence