Strain Fitness in Escherichia coli ECRC98 around JDDGAC_25245

Experiment: WM_Bas58

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas58
4,828,069	-	hcaD	JDDGAC_25235	0.90	-0.0
4,828,171	+				+0.8
4,828,172	-				+1.0
4,828,195	+				-0.2
4,828,223	+				-2.0
4,828,280	+				+0.6
4,828,317	+	hcaB	JDDGAC_25240	0.14	+0.2
4,828,318	-	hcaB	JDDGAC_25240	0.14	-2.2
4,828,453	+	hcaB	JDDGAC_25240	0.31	+1.2
4,828,482	-	hcaB	JDDGAC_25240	0.34	+1.1
4,828,516	+	hcaB	JDDGAC_25240	0.39	+1.8
4,828,664	+	hcaB	JDDGAC_25240	0.57	+0.8
4,828,665	-	hcaB	JDDGAC_25240	0.57	-1.6
4,828,717	+	hcaB	JDDGAC_25240	0.63	+0.5
4,828,718	-	hcaB	JDDGAC_25240	0.63	-2.1
4,828,825	-	hcaB	JDDGAC_25240	0.77	-0.5
4,828,855	+	hcaB	JDDGAC_25240	0.80	-0.4
4,828,855	+	hcaB	JDDGAC_25240	0.80	+0.5
4,828,855	+	hcaB	JDDGAC_25240	0.80	+1.4
4,828,856	-	hcaB	JDDGAC_25240	0.80	-3.8
4,828,937	-				-0.8
4,829,062	+	hcaC	JDDGAC_25245	0.16	-2.0
4,829,069	+	hcaC	JDDGAC_25245	0.18	-0.4
4,829,069	+	hcaC	JDDGAC_25245	0.18	-1.1
4,829,102	-	hcaC	JDDGAC_25245	0.28	-1.9
4,829,218	-	hcaC	JDDGAC_25245	0.64	-2.3
4,829,318	+				+1.1
4,829,318	+				-0.8
4,829,340	+				-0.7
4,829,364	+				-2.2
4,829,452	+	hcaF	JDDGAC_25250	0.23	+0.3
4,829,453	-	hcaF	JDDGAC_25250	0.24	+0.5
4,829,453	-	hcaF	JDDGAC_25250	0.24	-3.1
4,829,514	+	hcaF	JDDGAC_25250	0.35	-1.0
4,829,514	+	hcaF	JDDGAC_25250	0.35	+0.2
4,829,515	-	hcaF	JDDGAC_25250	0.35	+0.7
4,829,515	-	hcaF	JDDGAC_25250	0.35	+2.0
4,829,556	+	hcaF	JDDGAC_25250	0.43	+0.0
4,829,557	-	hcaF	JDDGAC_25250	0.44	-0.0
4,829,823	+				+0.1
4,829,823	+				+0.8
4,829,823	+				-0.1
4,829,823	+				-0.7
4,829,823	+				-1.3
4,829,824	-				-0.8
4,829,824	-				+0.3
4,829,935	-				-0.9
4,829,968	-				+0.4
4,829,968	-				-0.0
4,829,968	-				+0.2
4,829,971	+				+0.4
4,829,971	+				+0.1
4,829,971	+				+0.7
4,829,971	+				-1.2
4,829,972	-				-0.4
4,829,972	-				+1.0
4,829,972	-				-1.5
4,829,972	-				+0.3
4,829,972	-				-1.0
4,829,972	-				+0.4
4,829,972	-				-0.8
4,829,972	-				+1.4
4,830,190	+	hcaE	JDDGAC_25255	0.25	+0.2
4,830,190	+	hcaE	JDDGAC_25255	0.25	+0.5
4,830,191	-	hcaE	JDDGAC_25255	0.25	-2.0
4,830,289	+	hcaE	JDDGAC_25255	0.33	+1.4
4,830,289	+	hcaE	JDDGAC_25255	0.33	-1.6
4,830,290	-	hcaE	JDDGAC_25255	0.33	+0.4
4,830,290	-	hcaE	JDDGAC_25255	0.33	-0.8
4,830,290	-	hcaE	JDDGAC_25255	0.33	-0.4