Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_24640 and JDDGAC_24645 are separated by 56 nucleotides JDDGAC_24645 and JDDGAC_24650 are separated by 0 nucleotides JDDGAC_24650 and JDDGAC_24655 are separated by 97 nucleotides
JDDGAC_24640: JDDGAC_24640 - conserved DNA-binding protein, at 4,724,737 to 4,726,077
_24640
JDDGAC_24645: JDDGAC_24645 - DNA-binding protein, at 4,726,134 to 4,726,382
_24645
JDDGAC_24650: JDDGAC_24650 - hypothetical protein, at 4,726,383 to 4,726,781
_24650
JDDGAC_24655: JDDGAC_24655 - hypothetical protein, at 4,726,879 to 4,727,292
_24655
Position (kb) 4726
4727 Strain fitness (log2 ratio) -1
0
1 at 4725.249 kb on + strand, within JDDGAC_24640 at 4725.402 kb on + strand, within JDDGAC_24640 at 4725.402 kb on + strand, within JDDGAC_24640 at 4725.403 kb on - strand, within JDDGAC_24640 at 4725.926 kb on + strand, within JDDGAC_24640 at 4726.209 kb on + strand, within JDDGAC_24645 at 4726.675 kb on + strand, within JDDGAC_24650 at 4726.830 kb on + strand at 4727.103 kb on - strand, within JDDGAC_24655 at 4727.326 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 4,725,249 + JDDGAC_24640 0.38 +0.1 4,725,402 + JDDGAC_24640 0.50 -0.1 4,725,402 + JDDGAC_24640 0.50 +0.1 4,725,403 - JDDGAC_24640 0.50 +0.1 4,725,926 + JDDGAC_24640 0.89 -0.6 4,726,209 + JDDGAC_24645 0.30 -0.9 4,726,675 + JDDGAC_24650 0.73 -0.5 4,726,830 + +1.2 4,727,103 - JDDGAC_24655 0.54 -0.3 4,727,326 + +0.6
Or see this region's nucleotide sequence