Strain Fitness in Escherichia coli ECRC98 around JDDGAC_23495

Experiment: WM_Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntygeN and ygeN are separated by 16 nucleotidesygeN and ygeK are separated by 411 nucleotidesygeK and JDDGAC_23500 are separated by 18 nucleotidesJDDGAC_23500 and ygeI are separated by 186 nucleotides JDDGAC_23485: ygeN - Putative uncharacterized protein YgeN, at 4,499,326 to 4,499,586 ygeN JDDGAC_23490: ygeN - Putative uncharacterized protein YgeN, at 4,499,603 to 4,500,034 ygeN JDDGAC_23495: ygeK - Uncharacterized response regulatory protein YgeK, at 4,500,446 to 4,500,889 ygeK JDDGAC_23500: JDDGAC_23500 - Transglycosylase SLT domain-containing protein, at 4,500,908 to 4,501,309 _23500 JDDGAC_23505: ygeI - Uncharacterized protein YgeI, at 4,501,496 to 4,501,714 ygeI Position (kb) 4500 4501Strain fitness (log2 ratio) -2 -1 0 1at 4499.722 kb on + strand, within ygeNat 4499.725 kb on - strand, within ygeNat 4499.757 kb on + strand, within ygeNat 4500.342 kb on + strandat 4500.496 kb on + strand, within ygeKat 4500.649 kb on - strand, within ygeKat 4500.778 kb on - strand, within ygeKat 4500.888 kb on - strandat 4501.276 kb on + strandat 4501.413 kb on + strandat 4501.630 kb on + strand, within ygeIat 4501.808 kb on + strandat 4501.848 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
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4,499,722 + ygeN JDDGAC_23490 0.28 +0.5
4,499,725 - ygeN JDDGAC_23490 0.28 -0.9
4,499,757 + ygeN JDDGAC_23490 0.36 -1.8
4,500,342 + -2.0
4,500,496 + ygeK JDDGAC_23495 0.11 -0.5
4,500,649 - ygeK JDDGAC_23495 0.46 -1.9
4,500,778 - ygeK JDDGAC_23495 0.75 -2.2
4,500,888 - -1.0
4,501,276 + -1.7
4,501,413 + -0.6
4,501,630 + ygeI JDDGAC_23505 0.61 +0.2
4,501,808 + -0.0
4,501,848 - -0.4

Or see this region's nucleotide sequence