Strain Fitness in Escherichia coli ECRC98 around JDDGAC_19215

Experiment: WM_Bas58

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas58
3,656,611	+				-0.9
3,656,611	+				-0.1
3,656,611	+				-0.3
3,656,611	+				+1.6
3,656,611	+				+1.7
3,656,693	+				+2.1
3,656,693	+				-1.1
3,656,693	+				+1.4
3,656,693	+				-0.7
3,656,694	-				+1.1
3,656,694	-				-0.3
3,656,694	-				-0.1
3,656,741	+	yicC	JDDGAC_19210	0.15	-1.1
3,656,742	-	yicC	JDDGAC_19210	0.15	+0.3
3,656,788	+	yicC	JDDGAC_19210	0.21	-0.1
3,656,789	-	yicC	JDDGAC_19210	0.21	+0.1
3,656,954	+	yicC	JDDGAC_19210	0.40	+0.1
3,656,954	+	yicC	JDDGAC_19210	0.40	-1.1
3,656,955	-	yicC	JDDGAC_19210	0.40	-1.9
3,656,955	-	yicC	JDDGAC_19210	0.40	+1.3
3,657,065	+	yicC	JDDGAC_19210	0.53	-1.2
3,657,150	-	yicC	JDDGAC_19210	0.62	-0.7
3,657,150	-	yicC	JDDGAC_19210	0.62	-0.1
3,657,208	-	yicC	JDDGAC_19210	0.69	-1.2
3,657,282	-	yicC	JDDGAC_19210	0.78	-1.3
3,657,282	-	yicC	JDDGAC_19210	0.78	-0.8
3,657,282	-	yicC	JDDGAC_19210	0.78	-0.1
3,657,282	-	yicC	JDDGAC_19210	0.78	-0.7
3,657,282	-	yicC	JDDGAC_19210	0.78	-0.2
3,657,317	+	yicC	JDDGAC_19210	0.82	-0.8
3,657,317	+	yicC	JDDGAC_19210	0.82	-0.2
3,657,370	+	yicC	JDDGAC_19210	0.88	+1.3
3,657,383	-	yicC	JDDGAC_19210	0.89	-0.4
3,657,452	-				-0.4
3,657,461	+				-0.4
3,657,462	-				-0.7
3,657,473	+				+0.0
3,657,489	+				-0.8
3,657,490	-				-0.7
3,657,510	+				-1.7
3,657,510	+				+1.0
3,657,510	+				+0.6
3,657,511	-				-0.2
3,657,512	+				-0.3
3,657,513	-				+1.0
3,657,561	-				-0.3
3,657,561	-				-0.7
3,657,653	+				-1.7
3,657,653	+				-0.0
3,657,653	+				-0.2
3,657,654	-				-2.2
3,657,657	+				+0.8
3,657,659	+				+0.2
3,657,659	+				-0.9
3,657,659	+				+0.2
3,657,660	-				-1.1
3,657,726	-	rph	JDDGAC_19215	0.18	-1.8
3,657,787	-	rph	JDDGAC_19215	0.26	-2.3
3,657,842	+	rph	JDDGAC_19215	0.34	-1.1
3,657,904	+	rph	JDDGAC_19215	0.42	-1.4
3,657,936	-	rph	JDDGAC_19215	0.47	-0.3
3,658,128	+	rph	JDDGAC_19215	0.74	-1.8
3,658,165	+	rph	JDDGAC_19215	0.79	-2.0
3,658,165	+	rph	JDDGAC_19215	0.79	-2.6
3,658,240	+	rph	JDDGAC_19215	0.89	-1.9
3,658,241	-	rph	JDDGAC_19215	0.89	-0.7
3,658,241	-	rph	JDDGAC_19215	0.89	-0.3
3,658,285	+				-2.0
3,658,285	+				+1.0
3,658,286	-				-1.6
3,658,391	+				+1.1
3,658,392	-				-0.0
3,658,478	+	pyrE	JDDGAC_19225	0.15	-0.3
3,658,527	+	pyrE	JDDGAC_19225	0.23	+1.4
3,658,527	+	pyrE	JDDGAC_19225	0.23	-0.2
3,658,595	+	pyrE	JDDGAC_19225	0.33	+0.5
3,658,595	+	pyrE	JDDGAC_19225	0.33	+0.3
3,658,729	-	pyrE	JDDGAC_19225	0.54	+0.1
3,658,740	+	pyrE	JDDGAC_19225	0.56	+1.3
3,658,741	-	pyrE	JDDGAC_19225	0.56	+0.4
3,658,749	+	pyrE	JDDGAC_19225	0.57	+0.3
3,658,749	+	pyrE	JDDGAC_19225	0.57	-0.5
3,658,750	-	pyrE	JDDGAC_19225	0.57	-0.2
3,658,750	-	pyrE	JDDGAC_19225	0.57	+0.8
3,658,750	-	pyrE	JDDGAC_19225	0.57	+0.5
3,658,750	-	pyrE	JDDGAC_19225	0.57	-1.7
3,658,901	+	pyrE	JDDGAC_19225	0.81	+0.9
3,658,901	+	pyrE	JDDGAC_19225	0.81	+0.0
3,658,902	-	pyrE	JDDGAC_19225	0.81	+1.4
3,658,902	-	pyrE	JDDGAC_19225	0.81	-1.1
3,658,902	-	pyrE	JDDGAC_19225	0.81	-0.4
3,658,921	+	pyrE	JDDGAC_19225	0.84	+0.4
3,658,921	+	pyrE	JDDGAC_19225	0.84	-1.4
3,658,921	+	pyrE	JDDGAC_19225	0.84	+1.1
3,658,949	+	pyrE	JDDGAC_19225	0.88	+1.2
3,658,949	+	pyrE	JDDGAC_19225	0.88	+1.1
3,658,950	-	pyrE	JDDGAC_19225	0.88	-0.0
3,659,001	-				-0.3
3,659,058	+				-0.7
3,659,058	+				+2.2
3,659,058	+				-1.0
3,659,059	-				-0.1
3,659,059	-				-0.6
3,659,059	-				+1.1
3,659,061	+				-1.0
3,659,062	-				-2.0
3,659,081	+				-0.5
3,659,119	-				-1.6
3,659,152	+	slmA	JDDGAC_19230	0.15	+3.0
3,659,152	+	slmA	JDDGAC_19230	0.15	-0.2
3,659,152	+	slmA	JDDGAC_19230	0.15	-1.2
3,659,152	+	slmA	JDDGAC_19230	0.15	-0.6
3,659,153	-	slmA	JDDGAC_19230	0.16	-0.8
3,659,153	-	slmA	JDDGAC_19230	0.16	+1.2
3,659,153	-	slmA	JDDGAC_19230	0.16	+0.2
3,659,168	+	slmA	JDDGAC_19230	0.18	-0.1
3,659,169	-	slmA	JDDGAC_19230	0.18	-0.4
3,659,169	-	slmA	JDDGAC_19230	0.18	-2.5
3,659,205	+	slmA	JDDGAC_19230	0.24	-0.1
3,659,263	+	slmA	JDDGAC_19230	0.34	-1.5