Strain Fitness in Escherichia coli ECRC98 around JDDGAC_16130

Experiment: WM_Bas58

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas58
3,037,546	-	lysS	JDDGAC_16120	0.55	-0.1
3,037,555	-	lysS	JDDGAC_16120	0.56	+1.5
3,037,641	+	lysS	JDDGAC_16120	0.62	-0.1
3,037,641	+	lysS	JDDGAC_16120	0.62	+0.1
3,037,642	-	lysS	JDDGAC_16120	0.62	+0.1
3,037,642	-	lysS	JDDGAC_16120	0.62	-1.7
3,037,642	-	lysS	JDDGAC_16120	0.62	+0.0
3,037,765	+	lysS	JDDGAC_16120	0.70	-0.0
3,037,775	+	lysS	JDDGAC_16120	0.70	-0.1
3,037,776	-	lysS	JDDGAC_16120	0.71	+0.1
3,037,782	-	lysS	JDDGAC_16120	0.71	-2.6
3,037,784	+	lysS	JDDGAC_16120	0.71	-0.9
3,037,784	+	lysS	JDDGAC_16120	0.71	+0.8
3,037,785	-	lysS	JDDGAC_16120	0.71	-0.3
3,037,785	-	lysS	JDDGAC_16120	0.71	+0.9
3,037,814	+	lysS	JDDGAC_16120	0.73	+0.9
3,037,815	-	lysS	JDDGAC_16120	0.73	-1.5
3,037,871	+	lysS	JDDGAC_16120	0.77	+1.0
3,037,882	-	lysS	JDDGAC_16120	0.78	-1.3
3,037,985	+	lysS	JDDGAC_16120	0.84	-0.7
3,037,993	+	lysS	JDDGAC_16120	0.85	+0.5
3,038,074	-				-0.3
3,038,085	+				+0.1
3,038,104	-				-1.0
3,038,154	-				+0.9
3,038,166	-				-0.3
3,038,166	-				-0.9
3,038,174	+				+0.6
3,038,174	+				-0.2
3,038,175	-				-0.0
3,038,233	-				-0.4
3,038,333	+				+0.1
3,038,334	-				+0.2
3,038,334	-				-0.1
3,038,343	-				-0.8
3,038,409	+	ghoT	JDDGAC_16125	0.39	+1.2
3,038,452	-	ghoT	JDDGAC_16125	0.64	-0.7
3,038,452	-	ghoT	JDDGAC_16125	0.64	-0.3
3,038,530	+				+0.4
3,038,531	-				-0.9
3,038,580	+	ghoS	JDDGAC_16130	0.13	-0.2
3,038,581	-	ghoS	JDDGAC_16130	0.13	-1.6
3,038,633	-	ghoS	JDDGAC_16130	0.31	-0.8
3,038,725	-	ghoS	JDDGAC_16130	0.62	-1.4
3,038,810	+				+0.7
3,038,811	-				-0.4
3,038,815	-				-1.7
3,038,857	-				-0.3
3,038,883	+				-0.5
3,038,911	-				-0.0
3,038,917	+				-0.6
3,039,085	-				+0.9
3,039,125	+	yjdJ	JDDGAC_16135	0.22	+0.1
3,039,226	+	yjdJ	JDDGAC_16135	0.59	-0.0
3,039,227	-	yjdJ	JDDGAC_16135	0.59	+0.6
3,039,302	-	yjdJ	JDDGAC_16135	0.87	+1.0
3,039,350	+				-0.7
3,039,351	-				-1.4
3,039,354	+				-0.8
3,039,355	-				-1.0
3,039,362	+				-1.0
3,039,478	+	yjdI	JDDGAC_16140	0.56	-0.3
3,039,519	-	yjdI	JDDGAC_16140	0.74	+0.2
3,039,614	+				-0.3
3,039,614	+				+0.5
3,039,614	+				-1.5
3,039,614	+				+0.5
3,039,615	-				+0.1
3,039,637	+				+0.9
3,039,637	+				-0.5
3,039,637	+				-1.2
3,039,676	+				+0.2
3,039,679	-				-0.1
3,039,679	-				+1.6
3,039,679	-				+0.3
3,039,680	+				-0.3
3,039,681	-				+0.8
3,039,727	-				-0.1
3,039,789	-				-0.0
3,039,813	+				+0.5
3,039,827	+				+1.3